Christine M. Aceves
YOU?
Author Swipe
View article: Open access repository-scale propagated nearest neighbor suspect spectral library for untargeted metabolomics
Open access repository-scale propagated nearest neighbor suspect spectral library for untargeted metabolomics Open
Despite the increasing availability of tandem mass spectrometry (MS/MS) community spectral libraries for untargeted metabolomics over the past decade, the majority of acquired MS/MS spectra remain uninterpreted. To further aid in interpret…
View article: Genomic surveillance reveals dynamic shifts in the connectivity of COVID-19 epidemics
Genomic surveillance reveals dynamic shifts in the connectivity of COVID-19 epidemics Open
View article: Author Correction: Enhancing untargeted metabolomics using metadata-based source annotation
Author Correction: Enhancing untargeted metabolomics using metadata-based source annotation Open
View article: Genomic surveillance reveals dynamic shifts in the connectivity of COVID-19 epidemics
Genomic surveillance reveals dynamic shifts in the connectivity of COVID-19 epidemics Open
Summary The maturation of genomic surveillance in the past decade has enabled tracking of the emergence and spread of epidemics at an unprecedented level. During the COVID-19 pandemic, for example, genomic data revealed that local epidemic…
View article: Outbreak.info genomic reports: scalable and dynamic surveillance of SARS-CoV-2 variants and mutations
Outbreak.info genomic reports: scalable and dynamic surveillance of SARS-CoV-2 variants and mutations Open
View article: Wastewater sequencing reveals early cryptic SARS-CoV-2 variant transmission
Wastewater sequencing reveals early cryptic SARS-CoV-2 variant transmission Open
View article: Enhancing untargeted metabolomics using metadata-based source annotation
Enhancing untargeted metabolomics using metadata-based source annotation Open
View article: Outbreak.info genomic reports: scalable and dynamic surveillance of SARS-CoV-2 variants and mutations
Outbreak.info genomic reports: scalable and dynamic surveillance of SARS-CoV-2 variants and mutations Open
View article: Open Access Repository-Scale Propagated Nearest Neighbor Suspect Spectral Library for Untargeted Metabolomics
Open Access Repository-Scale Propagated Nearest Neighbor Suspect Spectral Library for Untargeted Metabolomics Open
Despite the increasing availability of tandem mass spectrometry (MS/MS) community spectral libraries for untargeted metabolomics over the past decade, the majority of acquired MS/MS spectra remain uninterpreted. To further aid in interpret…
View article: Outbreak.info genomic reports: scalable and dynamic surveillance of SARS-CoV-2 variants and mutations
Outbreak.info genomic reports: scalable and dynamic surveillance of SARS-CoV-2 variants and mutations Open
The emergence of SARS-CoV-2 variants of concern has prompted the need for near real-time genomic surveillance to inform public health interventions. In response to this need, the global scientific community, through unprecedented effort, h…
View article: Wastewater sequencing uncovers early, cryptic SARS-CoV-2 variant transmission
Wastewater sequencing uncovers early, cryptic SARS-CoV-2 variant transmission Open
Summary As SARS-CoV-2 continues to spread and evolve, detecting emerging variants early is critical for public health interventions. Inferring lineage prevalence by clinical testing is infeasible at scale, especially in areas with limited …
View article: Reference data-set driven metabolomics
Reference data-set driven metabolomics Open
Human untargeted metabolomics studies succeed in annotating only ~10% of molecular features. We, therefore, introduce reference data-driven analysis that uses the source data as a pseudo-MS/MS reference library to match against human metab…
View article: ReDU: a framework to find and reanalyze public mass spectrometry data
ReDU: a framework to find and reanalyze public mass spectrometry data Open
View article: Reference data based insights expand understanding of human metabolomes
Reference data based insights expand understanding of human metabolomes Open
Summary The human metabolome has remained largely unknown, with most studies annotating ∼10% of features. In nucleic acid sequencing, annotating transcripts by source has proven essential for understanding gene function. Here we generalize…
View article: Reproducible molecular networking of untargeted mass spectrometry data using GNPS
Reproducible molecular networking of untargeted mass spectrometry data using GNPS Open
View article: Reference Data Based Insights Expand Understanding of Human Metabolomes
Reference Data Based Insights Expand Understanding of Human Metabolomes Open
View article: Mass spectrometry searches using MASST
Mass spectrometry searches using MASST Open
View article: Repository-scale Co- and Re-analysis of Tandem Mass Spectrometry Data
Repository-scale Co- and Re-analysis of Tandem Mass Spectrometry Data Open
Metabolomics data are difficult to find and reuse, even in public repositories. We, therefore, developed the Reanalysis of Data User (ReDU) interface ( https://redu.ucsd.edu/ ), a community- and data-driven approach that solves this proble…
View article: Reproducible Molecular Networking Of Untargeted Mass Spectrometry Data Using GNPS.
Reproducible Molecular Networking Of Untargeted Mass Spectrometry Data Using GNPS. Open
Herein, we present a protocol for the use of Global Natural Products Social (GNPS) Molecular Networking, an interactive online chemistry-focused mass spectrometry data curation and analysis infrastructure. The goal of GNPS is to provide as…
View article: Reproducible Molecular Networking Of Untargeted Mass Spectrometry Data Using GNPS.
Reproducible Molecular Networking Of Untargeted Mass Spectrometry Data Using GNPS. Open
Herein, we present a protocol for the use of Global Natural Products Social (GNPS) Molecular Networking, an interactive online chemistry-focused mass spectrometry data curation and analysis infrastructure. The goal of GNPS is to provide as…
View article: MASST: A Web-based Basic Mass Spectrometry Search Tool for Molecules to Search Public Data
MASST: A Web-based Basic Mass Spectrometry Search Tool for Molecules to Search Public Data Open
Correspondence We introduce a web-enabled small-molecule mass spectrometry (MS) search engine. To date, no tool can query all the public small-molecule tandem MS data in metabolomics repositories, greatly limiting the utility of these reso…
View article: Untargeted Mass Spectrometry-Based Metabolomics Tracks Molecular Changes in Raw and Processed Foods and Beverages
Untargeted Mass Spectrometry-Based Metabolomics Tracks Molecular Changes in Raw and Processed Foods and Beverages Open
A major aspect of our daily lives is the need to acquire, store and prepare our food. Storage and preparation can have drastic effects on the compositional chemistry of our foods, but we have a limited understanding of the temporal nature …