Christoffer Bugge Harder
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View article: Extreme overall mushroom genome expansion in Mycena s.s. irrespective of plant hosts or substrate specializations
Extreme overall mushroom genome expansion in Mycena s.s. irrespective of plant hosts or substrate specializations Open
Mycena s.s. is a ubiquitous mushroom genus whose members degrade multiple dead plant substrates and opportunistically invade living plant roots. Having sequenced the nuclear genomes of 24 Mycena species, we find them to defy the expected p…
View article: Table S5. <b>Summary of horizontally transferred genes in </b><b><i>Mycena</i></b><b> spp.</b>
Table S5. <b>Summary of horizontally transferred genes in </b><b><i>Mycena</i></b><b> spp.</b> Open
Mycena comparative genomics.
View article: <b>Table S1. Strain, ecological information, MUCL deposition identifiers, genomic data overview and sources of publication for pre-existing genomes.</b>
<b>Table S1. Strain, ecological information, MUCL deposition identifiers, genomic data overview and sources of publication for pre-existing genomes.</b> Open
Mycena comparative genomics.
View article: Vertical and horizontal gene transfer shaped plant colonization and biomass degradation in the fungal genus Armillaria
Vertical and horizontal gene transfer shaped plant colonization and biomass degradation in the fungal genus Armillaria Open
View article: <i>Mycena</i> species can be opportunist‐generalist plant root invaders
<i>Mycena</i> species can be opportunist‐generalist plant root invaders Open
Traditional strict separation of fungi into ecological niches as mutualist, parasite or saprotroph is increasingly called into question. Sequences of assumed saprotrophs have been amplified from plant root interiors, and several saprotroph…
View article: TableS5.xlsx
TableS5.xlsx Open
Orthology in Mycena.
View article: Table S2.
Table S2. Open
Table S2. Count of transposable elements overlapping the gene coding regions among 58 fungi for 6 PFAM domains. The following TE families are included for the analysis, DNA transpososns (DNA), retrotransposon with long terminal repeats (LT…
View article: TableS4.xlsx
TableS4.xlsx Open
Orthology in Mycena.
View article: TableS7.xlsx
TableS7.xlsx Open
Table 5. Permanova values and summaries.
View article: TableS6.xlsx
TableS6.xlsx Open
Orthology in Mycena.
View article: <b>Table S7. Significant results of correlation analyses between DNA transposons, genome size, LTR elements, unclassified genes, and gene counts of SSPs, lipases, proteases, and CAZyme classes.</b>
<b>Table S7. Significant results of correlation analyses between DNA transposons, genome size, LTR elements, unclassified genes, and gene counts of SSPs, lipases, proteases, and CAZyme classes.</b> Open
Mycena comparative genomics.
View article: Table S6. Orthologs of Neurospora genome maintenance genes identified in Mycena and non-Mycena species examined here.
Table S6. Orthologs of Neurospora genome maintenance genes identified in Mycena and non-Mycena species examined here. Open
Mycena comparative genomics.
View article: Table S4. <b>Orthogroups in which Mycena species are enriched.</b>
Table S4. <b>Orthogroups in which Mycena species are enriched.</b> Open
Mycena comparative genomics.
View article: TableS6.xlsx
TableS6.xlsx Open
Table S6. Strain, ecological information, MUCL deposition identifiers, genomic data overview and sources of publication for pre-existing genomes.
View article: TableS5.xlsx
TableS5.xlsx Open
Table 5. Permanova values and summaries.
View article: TableS7.xlsx
TableS7.xlsx Open
Table S6. Strain, ecological information, MUCL deposition identifiers, genomic data overview and sources of publication for pre-existing genomes.
View article: TableS6.xlsx
TableS6.xlsx Open
Table 5. Permanova values and summaries.
View article: TableS5.xlsx
TableS5.xlsx Open
Mycena enriched clusters in COMPARE analyses.
View article: Full Supplementary Table S13&S14.xlsx
Full Supplementary Table S13&S14.xlsx Open
Full stepwise ANOVA analysis of stable isotopes from Mycena and surroundings in the study.
View article: TableS2.xlsx
TableS2.xlsx Open
Mycena enriched clusters in COMPARE analyses.
View article: TableS8.xlsx
TableS8.xlsx Open
Table S6. Strain, ecological information, MUCL deposition identifiers, genomic data overview and sources of publication for pre-existing genomes.
View article: Table S3. Gene annotation and transcription for Fungal-type DNA-binding domain.
Table S3. Gene annotation and transcription for Fungal-type DNA-binding domain. Open
Fungal comparative genomics.
View article: TableS4.xlsx
TableS4.xlsx Open
Mycena enriched clusters in COMPARE analyses.
View article: TableS3.xlsx
TableS3.xlsx Open
Mycena enriched clusters in COMPARE analyses.
View article: Genomic innovation and horizontal gene transfer shaped plant colonization and biomass degradation strategies of a globally prevalent fungal pathogen
Genomic innovation and horizontal gene transfer shaped plant colonization and biomass degradation strategies of a globally prevalent fungal pathogen Open
Members of the fungal genus Armillaria are necrotrophic pathogens with efficient plant biomass-degrading strategies. The genus includes some of the largest terrestrial organisms on Earth, spreading underground and causing tremendous losses…
View article: <i>Mycena</i>species can be opportunist-generalist plant root invaders
<i>Mycena</i>species can be opportunist-generalist plant root invaders Open
Summary Recently, several saprotrophic genera have been found to invade/interact with plant roots in laboratory growth experiments, and this coincides with reports of abundant saprotrophic fungal sequences in plant roots. However, it is un…
View article: 18th Congress of European Mycologists Bioblitz 2019 – Naturalists Contribute to the Knowledge of Mycobiota and Lichenobiota of Białowieża Primeval Forest
18th Congress of European Mycologists Bioblitz 2019 – Naturalists Contribute to the Knowledge of Mycobiota and Lichenobiota of Białowieża Primeval Forest Open
A total of 561 records of 233 species of fungi are reported from the Polish part of Białowieża Forest as a result of a short-term inventory that was conducted during the 18th Congress of European Mycologists (September 18–29, 2019). Four s…
View article: <i>In vitro</i> evidence of root colonization suggests ecological versatility in the genus <i>Mycena</i>
<i>In vitro</i> evidence of root colonization suggests ecological versatility in the genus <i>Mycena</i> Open
Summary The root‐associated habit has evolved on numerous occasions in different fungal lineages, suggesting a strong evolutionary pressure for saprotrophic fungi to switch to symbiotic associations with plants. Species within the ubiquito…
View article: COVID-19 Response Strategies: Differences Between Strategies of Male and Female Heads of Governments?
COVID-19 Response Strategies: Differences Between Strategies of Male and Female Heads of Governments? Open
View article: Successional trophic complexity and biogeographical structure of eukaryotic communities in waterworks' rapid sand filters
Successional trophic complexity and biogeographical structure of eukaryotic communities in waterworks' rapid sand filters Open
As groundwater-fed waterworks clean their raw inlet water with sand filters, a variety of pro- and eukaryotic microbial communities develop on these filters. While several studies have targeted the prokaryotic sand filter communities, litt…