Chuan-Yu Hsu
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View article: Draft genome sequence of an antimicrobial-resistant <i>Acinetobacter sp</i> . strain isolated from a catfish raised in a commercial farm
Draft genome sequence of an antimicrobial-resistant <i>Acinetobacter sp</i> . strain isolated from a catfish raised in a commercial farm Open
Acinetobacter sp . PFS20 was isolated from the intestine of a farm-raised catfish. The strain exhibits resistance to cefotaxime and carries six resistance genes: OXA-1003, ADC-135, adeF, AbaQ, AmvA, and abeS. Genomic analysis predicts its …
View article: Evaluation of different DNA extraction methods for the detection of Clostridium perfringens by loop-mediated isothermal amplification (LAMP) assay
Evaluation of different DNA extraction methods for the detection of Clostridium perfringens by loop-mediated isothermal amplification (LAMP) assay Open
SUMMARY: Clostridium perfringens (C. perfringens) is a gram-positive bacterium that causes necrotic enteritis in poultry, resulting in significant economic losses. The development of a reliable and cost-effective diagnostic assay is crucia…
View article: Population Genomics Informs Conservation Strategies for Critically Endangered <i>Kokia</i> Species in Hawai‘i
Population Genomics Informs Conservation Strategies for Critically Endangered <i>Kokia</i> Species in Hawai‘i Open
Island endemic species are particularly vulnerable to extinction due to their limited geographic ranges and small population sizes. Kokia is a genus found exclusively in the Hawaiian Islands, whose species were once major components of loc…
View article: Comparative population genomics of relictual Caribbean island <i>Gossypium hirsutum</i>
Comparative population genomics of relictual Caribbean island <i>Gossypium hirsutum</i> Open
Gossypium hirsutum is the world’s most important source of cotton fiber, yet the diversity and population structure of its wild forms remain largely unexplored. The complex domestication history of G. hirsutum combined with reciprocal intr…
View article: Dynamic immune response to Avian Pathogenic Escherichia coli infection in broiler chickens: Insights into pro-inflammatory and anti-inflammatory cytokine regulation
Dynamic immune response to Avian Pathogenic Escherichia coli infection in broiler chickens: Insights into pro-inflammatory and anti-inflammatory cytokine regulation Open
View article: Comparative transcriptomic and phenotypic analysis of monoclonal and polyclonal Populus deltoides genotypes
Comparative transcriptomic and phenotypic analysis of monoclonal and polyclonal Populus deltoides genotypes Open
Populus species are highly valued for bioenergy and bioproducts due to their rapid growth and productivity. Polyclonal plantings, or mixtures of Populus clones, have shown the potential to enhance resource utilization and productivity, lik…
View article: Genomic diversity and evolution of the Hawaiian Islands endemic <i>Kokia</i> (Malvaceae)
Genomic diversity and evolution of the Hawaiian Islands endemic <i>Kokia</i> (Malvaceae) Open
Island species are highly vulnerable due to habitat destruction and their often small population sizes with reduced genetic diversity. The Hawaiian Islands constitute the most isolated archipelago on the planet, harboring many endemic spec…
View article: High-throughput Oxford Nanopore sequencing-based approach for the multilocus sequence typing analysis of large-scale avian Escherichia coli study in Mississippi
High-throughput Oxford Nanopore sequencing-based approach for the multilocus sequence typing analysis of large-scale avian Escherichia coli study in Mississippi Open
Avian pathogenic Escherichia coli (APEC) cause avian colibacillosis and accurately distinguishing infectious isolates is critical for controlling its transmission. Multilocus sequence typing (MLST) is an accurate and efficient strain ident…
View article: Origin and diversity of the wild cottons (Gossypium hirsutum) of Mound Key, Florida
Origin and diversity of the wild cottons (Gossypium hirsutum) of Mound Key, Florida Open
View article: Complete genome sequences of two avian pathogenic <i>Escherichia coli</i> strains isolated from broilers exhibiting colibacillosis in Mississippi
Complete genome sequences of two avian pathogenic <i>Escherichia coli</i> strains isolated from broilers exhibiting colibacillosis in Mississippi Open
We report the whole-genome sequences of Escherichia coli strains APEC-O2-MS1266 and APEC-O2-MS1657 isolated from the liver and heart of infected broilers in Mississippi State, US. The genomic information of these two causative strains may …
View article: Genomic diversity and evolution in the Hawaiian Islands endemic Kokia (Malvaceae)
Genomic diversity and evolution in the Hawaiian Islands endemic Kokia (Malvaceae) Open
Island species are highly vulnerable due to habitat destruction and their often small population sizes with reduced genetic diversity. The Hawaiian Islands constitute the most isolated archipelago on the planet, harboring many endemic spec…
View article: 50 Effects of cottonseed supplementation on the rumen microbiota of parasite-challenged meat goats
50 Effects of cottonseed supplementation on the rumen microbiota of parasite-challenged meat goats Open
Cotton serves as a vital economic driver within the agricultural sector of Mississippi. The seeds of cotton are rich in fat and protein content, making them a cost-effective alternative to soybean meal and other expensive protein sources. …
View article: Changes in gene expression in the intestinal mucus of broilers with woody breast myopathy
Changes in gene expression in the intestinal mucus of broilers with woody breast myopathy Open
View article: In silico prediction and expression analysis of vaccine candidate genes of Campylobacter jejuni
In silico prediction and expression analysis of vaccine candidate genes of Campylobacter jejuni Open
View article: A high-quality chromosome-level genome assembly of rohu carp, <i>Labeo rohita</i> , and its utilization in SNP-based exploration of gene flow and sex determination
A high-quality chromosome-level genome assembly of rohu carp, <i>Labeo rohita</i> , and its utilization in SNP-based exploration of gene flow and sex determination Open
Labeo rohita (rohu) is a carp important to aquaculture in South Asia, with a production volume close to Atlantic salmon. While genetic improvements to rohu are ongoing, the genomic methods commonly used in other aquaculture improvement pro…
View article: Complete Genome Sequences of Four Campylobacter jejuni Strains Isolated from Retail Chicken Meat and Broiler Feces
Complete Genome Sequences of Four Campylobacter jejuni Strains Isolated from Retail Chicken Meat and Broiler Feces Open
Campylobacter jejuni is the leading pathogen that causes foodborne infections. Here, we report the complete genome sequences of four C. jejuni strains isolated from retail chicken meat and broiler feces samples. Genes encoding type VI secr…
View article: A high-quality chromosome-level genome assembly of rohu carp, <i>Labeo rohita</i>, and its utilization in SNP-based exploration of gene flow and sex determination
A high-quality chromosome-level genome assembly of rohu carp, <i>Labeo rohita</i>, and its utilization in SNP-based exploration of gene flow and sex determination Open
Labeo rohita (rohu) is a carp important to aquaculture in South Asia, with a production volume close to Atlantic salmon. While genetic improvements to rohu are ongoing, the genomic methods commonly used in other aquaculture improvement pro…
View article: Innovations in double digest restriction-site associated DNA sequencing (ddRAD-Seq) method for more efficient SNP identification
Innovations in double digest restriction-site associated DNA sequencing (ddRAD-Seq) method for more efficient SNP identification Open
We present an improved ddRAD-Seq protocol for identifying single nucleotide polymorphisms (SNPs). It utilizes optimally sized restriction enzyme digestion fragments, quick acting ligases that are neutral with the restriction enzyme buffer …
View article: Functional Diversification of Populus FLOWERING LOCUS D-LIKE3 Transcription Factor and Two Paralogs in Shoot Ontogeny, Flowering, and Vegetative Phenology
Functional Diversification of Populus FLOWERING LOCUS D-LIKE3 Transcription Factor and Two Paralogs in Shoot Ontogeny, Flowering, and Vegetative Phenology Open
Both the evolution of tree taxa and whole-genome duplication (WGD) have occurred many times during angiosperm evolution. Transcription factors are preferentially retained following WGD suggesting that functional divergence of duplicates co…
View article: The identification of type I MADS box genes as the upstream activators of an endosperm-specific invertase inhibitor in Arabidopsis
The identification of type I MADS box genes as the upstream activators of an endosperm-specific invertase inhibitor in Arabidopsis Open
View article: Complete genome sequence of multidrug-resistant avian pathogenic Escherichia coli strain APEC-O2-MS1170
Complete genome sequence of multidrug-resistant avian pathogenic Escherichia coli strain APEC-O2-MS1170 Open
The genome sequence of APEC-O2-MS1170 provides valuable information on resistance mechanisms and virulence characteristics of pathogenic E. coli as well as information for tracing the potential spread of this MDR strain.
View article: Identification of Antimicrobial Resistance Determinants in Aeromonas veronii Strain MS-17-88 Recovered From Channel Catfish (Ictalurus punctatus)
Identification of Antimicrobial Resistance Determinants in Aeromonas veronii Strain MS-17-88 Recovered From Channel Catfish (Ictalurus punctatus) Open
Aeromonas veronii is a Gram-negative species ubiquitous in different aquatic environments and capable of causing a variety of diseases to a broad host range. Aeromonas species have the capability to carry and acquire antimicr…
View article: Publisher Correction: Therapeutic potential of N-acetylcysteine in acrylamide acute neurotoxicity in adult zebrafish
Publisher Correction: Therapeutic potential of N-acetylcysteine in acrylamide acute neurotoxicity in adult zebrafish Open
An amendment to this paper has been published and can be accessed via a link at the top of the paper.
View article: Targeting redox metabolism: the perfect storm induced by acrylamide poisoning in the brain
Targeting redox metabolism: the perfect storm induced by acrylamide poisoning in the brain Open
Exposure to acrylamide may lead to different neurotoxic effects in humans and in experimental animals. To gain insights into this poorly understood type of neurotoxicological damage, we used a multi-omic approach to characterize the molecu…
View article: Therapeutic potential of N-acetylcysteine in acrylamide acute neurotoxicity in adult zebrafish
Therapeutic potential of N-acetylcysteine in acrylamide acute neurotoxicity in adult zebrafish Open
View article: Using a multiomic approach to unravel the mecanisms of acrylamide neurotoxicity
Using a multiomic approach to unravel the mecanisms of acrylamide neurotoxicity Open
View article: A genomic resource for the sedentary semi-endoparasitic reniform nematode, <i>Rotylenchulus reniformis</i> Linford & Oliveira
A genomic resource for the sedentary semi-endoparasitic reniform nematode, <i>Rotylenchulus reniformis</i> Linford & Oliveira Open
The reniform nematode ( Rotylenchulus reniformis ) is a sedentary semi-endoparasitic species that is pathogenic on many row crops, fruits, and vegetables. Here, the authors present a draft genome assembly of R . reniformis using small- and…
View article: Molecular evolution in immune genes across the avian tree of life
Molecular evolution in immune genes across the avian tree of life Open
All organisms encounter pathogens, and birds are especially susceptible to infection by malaria parasites and other haemosporidians. It is important to understand how immune genes, primarily innate immune genes which are the first line of …
View article: Complete Genome Sequence of Multidrug-Resistant Edwardsiella ictaluri Strain MS-17-156
Complete Genome Sequence of Multidrug-Resistant Edwardsiella ictaluri Strain MS-17-156 Open
Edwardsiella ictaluri is a significant pathogen of cultured fish, particularly channel catfish. Here, we present the complete genome sequence of a multidrug-resistant E. ictaluri strain, MS-17-156, isolated from diseased channel catfish. T…
View article: Complete Genome Sequence of Multidrug-Resistant Plesiomonas shigelloides Strain MS-17-188
Complete Genome Sequence of Multidrug-Resistant Plesiomonas shigelloides Strain MS-17-188 Open
Plesiomonas shigelloides is a Gram-negative bacterium isolated from diverse environments. Here, we describe the complete genome sequence of the multidrug-resistant P. shigelloides strain MS-17-188, isolated from a diseased catfish. Availab…