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View article: Microbial Diversity Under the Influence of Natural Gas Storage in a Deep Aquifer
Microbial Diversity Under the Influence of Natural Gas Storage in a Deep Aquifer Open
Deep aquifers (up to 2km deep) contain massive volumes of water harboring large and diverse microbial communities at high pressure. Aquifers are home to microbial ecosystems that participate in physicochemical balances. These microorganism…
View article: Capture by hybridization for full‐length barcode‐based eukaryotic and prokaryotic biodiversity inventories of deep sea ecosystems
Capture by hybridization for full‐length barcode‐based eukaryotic and prokaryotic biodiversity inventories of deep sea ecosystems Open
Biodiversity inventory of marine systems remains limited due to unbalanced access to the three ocean dimensions. The use of environmental DNA (eDNA) for metabarcoding allows fast and effective biodiversity inventory and is forecast as a fu…
View article: Metformin treatment for 8 days impacts multiple intestinal parameters in high-fat high-sucrose fed mice
Metformin treatment for 8 days impacts multiple intestinal parameters in high-fat high-sucrose fed mice Open
View article: Capture by hybridization for full-length barcode-based eukaryotic and prokaryotic biodiversity inventories for deep sea ecosystems
Capture by hybridization for full-length barcode-based eukaryotic and prokaryotic biodiversity inventories for deep sea ecosystems Open
Biodiversity inventory remains limited in marine systems due to unbalanced access to the three ocean dimensions. The use of environmental DNA (eDNA) for metabarcoding allows fast and effective biodiversity inventory and is forecast as a fu…
View article: Rapid metformin effects on multiple intestinal functions in high-fat high-sucrose fed mice
Rapid metformin effects on multiple intestinal functions in high-fat high-sucrose fed mice Open
Although the mechanism of action of the antidiabetic drug metformin is still a matter of discussions, it is well accepted that the gut plays an important role. To gain more insights into the mechanisms that occur in the different regions o…
View article: Food Chemicals Disrupt Human Gut Microbiota Activity And Impact Intestinal Homeostasis As Revealed By In Vitro Systems
Food Chemicals Disrupt Human Gut Microbiota Activity And Impact Intestinal Homeostasis As Revealed By In Vitro Systems Open
Growing evidence indicates that the human gut microbiota interacts with xenobiotics, including persistent organic pollutants and foodborne chemicals. The toxicological relevance of the gut microbiota-pollutant interplay is of great concern…
View article: ASaiM: a Galaxy-based framework to analyze microbiota data
ASaiM: a Galaxy-based framework to analyze microbiota data Open
Background New generations of sequencing platforms coupled to numerous bioinformatics tools have led to rapid technological progress in metagenomics and metatranscriptomics to investigate complex microorganism communities. Nevertheless, a …
View article: ASaiM: a Galaxy-based framework to analyze raw shotgun data from microbiota
ASaiM: a Galaxy-based framework to analyze raw shotgun data from microbiota Open
Background New generation of sequencing platforms coupled to numerous bioinformatics tools has led to rapid technological progress in metagenomics and metatranscriptomics to investigate complex microorganism communities. Nevertheless, a co…
View article: Environmental Pollutant Benzo[a]Pyrene Impacts the Volatile Metabolome and Transcriptome of the Human Gut Microbiota
Environmental Pollutant Benzo[a]Pyrene Impacts the Volatile Metabolome and Transcriptome of the Human Gut Microbiota Open
Benzo[a]pyrene (B[a]P) is a ubiquitous, persistent, and carcinogenic pollutant that belongs to the large family of polycyclic aromatic hydrocarbons. Population exposure primarily occurs via contaminated food products, which i…
View article: ASaiM workflow to analyze raw metagenomic sequences
ASaiM workflow to analyze raw metagenomic sequences Open
The main workflow of ASaiM, an open-source opinionated Galaxy-based framework for microbiota analysis.This workflow takes as input a dataset of raw shotgun sequences (in FastQ format) from microbiota, preprocess it (yellow boxes), extracts…
View article: How to analyze raw sequencing data from microbiota? Using ASaiM!
How to analyze raw sequencing data from microbiota? Using ASaiM! Open
View article: ASaiM workflow to analyze raw sequences
ASaiM workflow to analyze raw sequences Open
The main workflow of ASaiM, an open-source opinionated Galaxy-based framework for microbiota analysis.This workflow takes as input a dataset of raw shotgun sequences (in FastQ format) from microbiota, preprocess it (yellow boxes), extracts…
View article: A Galaxy-based framework to analyze raw sequencing data from microbiota
A Galaxy-based framework to analyze raw sequencing data from microbiota Open