Clémence Fraslin
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View article: Amoebic Gill Disease ( <scp>AGD</scp> ) in Atlantic Salmon Investigated Through a Holo‐Omic Lens
Amoebic Gill Disease ( <span>AGD</span> ) in Atlantic Salmon Investigated Through a Holo‐Omic Lens Open
Interactions between host genetics and the resident microbiota are complex. Understanding these interactions offers interesting alternatives for addressing gill health and disease resistance in salmonids. Amoebic gill disease (AGD), caused…
View article: In-depth investigation of genome to refine QTL positions for spontaneous sex-reversal in XX rainbow trout
In-depth investigation of genome to refine QTL positions for spontaneous sex-reversal in XX rainbow trout Open
Sex determination is a flexible process in fish, controlled by genetics or environmental factors or a combination of both depending on the species. Revealing the underlying molecular mechanisms may have important implications for research …
View article: First genome-wide association and genomic prediction of ammonia‑nitrogen tolerance in tiger pufferfish (Takifugu rubripes)
First genome-wide association and genomic prediction of ammonia‑nitrogen tolerance in tiger pufferfish (Takifugu rubripes) Open
View article: In-depth investigation of genome to refine QTL positions for spontaneous sex-reversal in XX rainbow trout
In-depth investigation of genome to refine QTL positions for spontaneous sex-reversal in XX rainbow trout Open
Sex determination is a flexible process in fish, controlled by genetics or environmental factors or a combination of both depending on the species. Revealing the underlying molecular mechanisms may have important implications for research …
View article: A newly developed 20 K SNP array reveals QTLs for disease resistance to Cryptocaryon irritans in tiger pufferfish (Takifugu rubripes)
A newly developed 20 K SNP array reveals QTLs for disease resistance to Cryptocaryon irritans in tiger pufferfish (Takifugu rubripes) Open
View article: Fourteen candidate genes governing spontaneous sex-reversal in xx-rainbow trout
Fourteen candidate genes governing spontaneous sex-reversal in xx-rainbow trout Open
International audience
View article: First Genome-Wide Association and Genomic Prediction of Ammonia-Nitrogen Tolerance in Tiger Pufferfish (Takifugu Rubripes)
First Genome-Wide Association and Genomic Prediction of Ammonia-Nitrogen Tolerance in Tiger Pufferfish (Takifugu Rubripes) Open
View article: A Newly Developed 20k Snp Array Reveals Qtls for Disease Resistance to Cryptocaryon Irritans in Tiger Pufferfish (Takifugu Rubripes)
A Newly Developed 20k Snp Array Reveals Qtls for Disease Resistance to Cryptocaryon Irritans in Tiger Pufferfish (Takifugu Rubripes) Open
View article: Genetic diversity and population structure of farmed and wild Nile tilapia (Oreochromis niloticus) in Uganda: The potential for aquaculture selection and breeding programs
Genetic diversity and population structure of farmed and wild Nile tilapia (Oreochromis niloticus) in Uganda: The potential for aquaculture selection and breeding programs Open
Nile tilapia is one of the most important aquaculture species globally, providing high-quality animal protein for human nutrition and a source of income to sustain the livelihoods of many people in low- and middle-income countries. This sp…
View article: Potential of low-density genotype imputation for cost-efficient genomic selection for resistance to Flavobacterium columnare in rainbow trout (Oncorhynchus mykiss)
Potential of low-density genotype imputation for cost-efficient genomic selection for resistance to Flavobacterium columnare in rainbow trout (Oncorhynchus mykiss) Open
View article: Evaluation of low-density SNP panels and imputation for cost-effective genomic selection in four aquaculture species
Evaluation of low-density SNP panels and imputation for cost-effective genomic selection in four aquaculture species Open
Genomic selection can accelerate genetic progress in aquaculture breeding programmes, particularly for traits measured on siblings of selection candidates. However, it is not widely implemented in most aquaculture species, and remains expe…
View article: Potential of imputation for cost-efficient genomic selection for resistance to<i>Flavobacterium columnare</i>in rainbow trout (<i>Oncorhynchus mykiss</i>)
Potential of imputation for cost-efficient genomic selection for resistance to<i>Flavobacterium columnare</i>in rainbow trout (<i>Oncorhynchus mykiss</i>) Open
Background Flavobacterium columnare is the pathogen agent of columnaris disease, a major emerging disease affecting rainbow trout aquaculture. Selective breeding using genomic selection has potential to achieve cumulative improvement of ho…
View article: Genotypes and phenotypes of rainbow trout
Genotypes and phenotypes of rainbow trout Open
This dataset is composed of 10 files. 2 files are the raw genotypes (Trout_CD.ped) and map (Omykiss_57K.map) obtained with the 57K SNP Axiom Trout Genotyping Array in PLINK 1.9 format prior to quality control filtering af…
View article: Genotypes and phenotypes of rainbow trout
Genotypes and phenotypes of rainbow trout Open
This dataset is composed of 6 files. Two files are the raw genotypes (Trout_CD.ped) and map (Omykiss_57K.map) obtained with the 57K SNP Axiom Trout Genotyping Array in PLINK 1.9 format prior to quality control filtering after SNP calling w…
View article: Additional file 1 of Potential of low-density genotype imputation for cost-efficient genomic selection for resistance to Flavobacterium columnare in rainbow trout (Oncorhynchus mykiss)
Additional file 1 of Potential of low-density genotype imputation for cost-efficient genomic selection for resistance to Flavobacterium columnare in rainbow trout (Oncorhynchus mykiss) Open
Additional file 1: Table S1. Number of SNPs in the low-density panels. RandLD = random sampling of SNPs in the low-density panels. EquiLD = equidistant sampling of SNPs in the low-density panels. Table S2. Values of accuracy and bias of ge…
View article: Conserved QTL and chromosomal inversion affect resistance to columnaris disease in 2 rainbow trout (<i>Oncorhyncus mykiss</i>) populations
Conserved QTL and chromosomal inversion affect resistance to columnaris disease in 2 rainbow trout (<i>Oncorhyncus mykiss</i>) populations Open
We present a comparative genetic analysis of the quantitative trait loci underlying resistance to warm water columnaris disease in 2 farmed rainbow trout (Oncorhynchus mykiss) populations. We provide evidence for the conservation of a majo…
View article: Genome-wide association and genomic prediction of resistance to Flavobacterium columnare in a farmed rainbow trout population
Genome-wide association and genomic prediction of resistance to Flavobacterium columnare in a farmed rainbow trout population Open
Columnaris disease is an emerging disease affecting farmed rainbow trout (Oncorhynchus mykiss) globally. In aquaculture breeding, genomic selection has been increasingly used to improve traits that are difficult to measure on candidate fis…
View article: Genome-wide association and genomic prediction of resistance to <i>Flavobacterium columnare</i> in a farmed rainbow trout population
Genome-wide association and genomic prediction of resistance to <i>Flavobacterium columnare</i> in a farmed rainbow trout population Open
Columnaris disease is an emerging disease affecting farmed rainbow trout ( Oncorhynchus mykiss ) globally. In aquaculture breeding, genomic selection has been increasingly used to improve traits that are difficult to measure on candidate f…
View article: The impact of genetic relationship between training and validation populations on genomic prediction accuracy in Atlantic salmon
The impact of genetic relationship between training and validation populations on genomic prediction accuracy in Atlantic salmon Open
View article: The impact of genetic relationship between training and validation populations on genomic prediction accuracy in Atlantic salmon
The impact of genetic relationship between training and validation populations on genomic prediction accuracy in Atlantic salmon Open
The potential of genomic selection to improve production traits has been widely demonstrated in many aquaculture species. Atlantic salmon breeding programmes typically consist of sibling testing schemes, where traits that cannot be measure…
View article: Genetic determinism of spontaneous masculinisation in XX-female rainbow trout (O. mykiss)
Genetic determinism of spontaneous masculinisation in XX-female rainbow trout (O. mykiss) Open
International audience
View article: Genetic determinism of spontaneous masculinisation in XX female rainbow trout: new insights using medium throughput genotyping and whole-genome sequencing
Genetic determinism of spontaneous masculinisation in XX female rainbow trout: new insights using medium throughput genotyping and whole-genome sequencing Open
View article: Combining Multiple Approaches and Models to Dissect the Genetic Architecture of Resistance to Infections in Fish
Combining Multiple Approaches and Models to Dissect the Genetic Architecture of Resistance to Infections in Fish Open
Infectious diseases represent a major threat for the sustainable development of fish farming. Efficient vaccines are not available against all diseases, and growing antibiotics resistance limits the use of antimicrobial drugs in aquacultur…
View article: Genetic determinism of spontaneous masculinisation in XX female rainbow trout: new insights using medium throughput genotyping and whole-genome sequencing
Genetic determinism of spontaneous masculinisation in XX female rainbow trout: new insights using medium throughput genotyping and whole-genome sequencing Open
Rainbow trout has a male heterogametic (XY) sex determination system controlled by a major sex-determining gene, sdY . Unexpectedly, a few phenotypically masculinised fish are regularly observed in all-female farmed trout stocks. To better…
View article: How to genetically increase fillet yield in fish: Relevant genetic parameters and methods to predict genetic gain
How to genetically increase fillet yield in fish: Relevant genetic parameters and methods to predict genetic gain Open
View article: Genome-wide estimates of genetic diversity, inbreeding and effective size of experimental and commercial rainbow trout lines undergoing selective breeding
Genome-wide estimates of genetic diversity, inbreeding and effective size of experimental and commercial rainbow trout lines undergoing selective breeding Open
View article: Correction to: Quantitative trait loci for resistance to Flavobacterium psychrophilum in rainbow trout: effect of the mode of infection and evidence of epistatic interactions
Correction to: Quantitative trait loci for resistance to Flavobacterium psychrophilum in rainbow trout: effect of the mode of infection and evidence of epistatic interactions Open
After publication of this work [1], we noted that there was an error in Table 3 Line 4.
View article: Bases génétiques de la réponse à l'infection par Flavobacterium psychrophilum chez la truite arc-en-ciel : approche expérimentale et perspectives en sélection
Bases génétiques de la réponse à l'infection par Flavobacterium psychrophilum chez la truite arc-en-ciel : approche expérimentale et perspectives en sélection Open
Health management and disease control are of both major economic and environmental concerns for animal production systems. Bacterial diseases are responsible for important economic losses in fish farming. Flavobacterium psychrophilum, the …
View article: Quantitative trait loci for resistance to Flavobacterium psychrophilum in rainbow trout: effect of the mode of infection and evidence of epistatic interactions
Quantitative trait loci for resistance to Flavobacterium psychrophilum in rainbow trout: effect of the mode of infection and evidence of epistatic interactions Open
View article: Heterogeneity of genetic diversity throughout the genome in rainbow trout populations
Heterogeneity of genetic diversity throughout the genome in rainbow trout populations Open
International audience