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View article: Orthrus: a Pumilio-family gene involved in fruiting body and dark stipe development in Coprinopsis cinerea
Orthrus: a Pumilio-family gene involved in fruiting body and dark stipe development in Coprinopsis cinerea Open
Fruiting bodies of mushroom-forming fungi (Agaricomycetes) are complex multicellular structures whose formation is regulated by a developmental program that dynamically responds to environmental changes, such as light intensity. However, t…
View article: A new regulator of sporulation sheds light on spore morphogenesis and ballistospory in mushroom-forming fungi
A new regulator of sporulation sheds light on spore morphogenesis and ballistospory in mushroom-forming fungi Open
Sporulation is the most widespread means of reproduction and dispersal in fungi. In the Basidiomycota, sexual spores are produced on specialised cells known as basidia, from which they are discharged forcibly by a powered process called ba…
View article: Snowball: a novel gene family required for developmental patterning of fruiting bodies of mushroom-forming fungi (Agaricomycetes)
Snowball: a novel gene family required for developmental patterning of fruiting bodies of mushroom-forming fungi (Agaricomycetes) Open
The morphogenesis of sexual fruiting bodies of fungi is a complex process determined by a genetically encoded program. Fruiting bodies reached the highest complexity levels in the Agaricomycetes; yet, the underlying genetics is currently p…
View article: ContScout: sensitive detection and removal of contamination from annotated genomes
ContScout: sensitive detection and removal of contamination from annotated genomes Open
Contamination of genomes is an increasingly recognized problem affecting several downstream applications, from comparative evolutionary genomics to metagenomics. Here we introduce ContScout, a precise tool for eliminating foreign sequences…
View article: Snowball: a novel gene family required for developmental patterning in fruiting bodies of mushroom-forming fungi (Agaricomycetes)
Snowball: a novel gene family required for developmental patterning in fruiting bodies of mushroom-forming fungi (Agaricomycetes) Open
The morphogenesis of sexual fruiting bodies of fungi is a complex process determined by a genetically encoded program. Fruiting bodies reached the highest complexity levels in the Agaricomycetes, yet, the underlying genetics is currently p…
View article: Lessons on fruiting body morphogenesis from genomes and transcriptomes of <i>Agaricomycetes</i>
Lessons on fruiting body morphogenesis from genomes and transcriptomes of <i>Agaricomycetes</i> Open
Fruiting bodies (sporocarps, sporophores or basidiomata) of mushroom-forming fungi ( Agaricomycetes ) are among the most complex structures produced by fungi. Unlike vegetative hyphae, fruiting bodies grow determinately and follow a geneti…
View article: ContScout supporting data
ContScout supporting data Open
Supporting data for Balint et al "Sensitive detection and removal of contamination from annotated genomes by ContScout"
View article: Purging genomes of contamination eliminates systematic bias from evolutionary analyses of ancestral genomes
Purging genomes of contamination eliminates systematic bias from evolutionary analyses of ancestral genomes Open
Contamination of genomes and sequence databases is an increasingly recognized problem, however, efficient tools for removing alien sequences are still sparse and the impact of impure data on downstream analyses remains to be fully explored…
View article: Radiation of mushroom-forming fungi correlates with novel modes of protecting sexual fruiting bodies
Radiation of mushroom-forming fungi correlates with novel modes of protecting sexual fruiting bodies Open
The protection of vulnerable developing structures evolved repeatedly in terrestrial organisms and includes, among others, viviparity in animals and the seed in land plants. In mushroom-forming fungi (Agaricomycetes), sexual spores are bor…
View article: Lessons on fruiting body morphogenesis from genomes and transcriptomes of Agaricomycetes
Lessons on fruiting body morphogenesis from genomes and transcriptomes of Agaricomycetes Open
Fruiting bodies of mushroom-forming fungi (Agaricomycetes) are among the most complex structures produced by fungi. Unlike vegetative hyphae, fruiting bodies grow determinately and follow a genetically encoded developmental program that or…
View article: Developmental innovations promote species diversification in mushroom-forming fungi
Developmental innovations promote species diversification in mushroom-forming fungi Open
Fungi evolved complex fruiting body (‘mushroom’) morphologies as adaptations to efficient spore dispersal in terrestrial habitats. Mushroom-forming fungi (Agaricomycetes) display a graded series of developmental innovations related to frui…