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View article: Investigating interaction between genotype and microbiome profile in Irish honeybees
Investigating interaction between genotype and microbiome profile in Irish honeybees Open
View article: aurora: a machine learning gwas tool for analyzing microbial habitat adaptation
aurora: a machine learning gwas tool for analyzing microbial habitat adaptation Open
View article: Synthetically primed adaptation of bacterial metabolism to a non-native sugar substrate
Synthetically primed adaptation of bacterial metabolism to a non-native sugar substrate Open
View article: Synthetically-primed adaptation of Pseudomonas putida to a non-native substrate D-xylose
Synthetically-primed adaptation of Pseudomonas putida to a non-native substrate D-xylose Open
View article: aurora: A Machine Learning GWAS Tool For Analyzing Microbial Habitat Adaptation
aurora: A Machine Learning GWAS Tool For Analyzing Microbial Habitat Adaptation Open
This upload contains compressed raw data to rerun examples in the main text of aurora and the first version of aurora used in the paper.
View article: aurora: A Machine Learning GWAS Tool For Analyzing Microbial Habitat Adaptation
aurora: A Machine Learning GWAS Tool For Analyzing Microbial Habitat Adaptation Open
This upload contains compressed raw data to rerun examples in the main text of aurora.
View article: Genomic and metabolic plasticity drive alternative scenarios for adapting<i>Pseudomonas putida</i>to non-native substrate D-xylose
Genomic and metabolic plasticity drive alternative scenarios for adapting<i>Pseudomonas putida</i>to non-native substrate D-xylose Open
D-Xylose, a major constituent of plant biomass and second most abundant sugar on Earth, holds a considerable potential as a substrate for sustainable bio-production. Pseudomonas putida KT2440 is an attractive bacterial host for valorizing …
View article: A phylogenomic analysis of Limosilactobacillus reuteri reveals ancient and stable evolutionary relationships with rodents and birds and zoonotic transmission to humans
A phylogenomic analysis of Limosilactobacillus reuteri reveals ancient and stable evolutionary relationships with rodents and birds and zoonotic transmission to humans Open
View article: Additional file 3 of A phylogenomic analysis of Limosilactobacillus reuteri reveals ancient and stable evolutionary relationships with rodents and birds and zoonotic transmission to humans
Additional file 3 of A phylogenomic analysis of Limosilactobacillus reuteri reveals ancient and stable evolutionary relationships with rodents and birds and zoonotic transmission to humans Open
Additional file 3: Table S3. Lineage-specific accessory genes.
View article: Additional file 2 of A phylogenomic analysis of Limosilactobacillus reuteri reveals ancient and stable evolutionary relationships with rodents and birds and zoonotic transmission to humans
Additional file 2 of A phylogenomic analysis of Limosilactobacillus reuteri reveals ancient and stable evolutionary relationships with rodents and birds and zoonotic transmission to humans Open
Additional file 2: Table S2. Average nucleotide identity values between L. reuteri lineages and closely related species in the genus Limosilactobacillus.
View article: Additional file 1 of A phylogenomic analysis of Limosilactobacillus reuteri reveals ancient and stable evolutionary relationships with rodents and birds and zoonotic transmission to humans
Additional file 1 of A phylogenomic analysis of Limosilactobacillus reuteri reveals ancient and stable evolutionary relationships with rodents and birds and zoonotic transmission to humans Open
Additional file 1: Table S1. Genome list and metadata.
View article: Engineering of <i>Pseudomonas putida</i> for accelerated co-utilization of glucose and cellobiose yields aerobic overproduction of pyruvate explained by an upgraded metabolic model
Engineering of <i>Pseudomonas putida</i> for accelerated co-utilization of glucose and cellobiose yields aerobic overproduction of pyruvate explained by an upgraded metabolic model Open
Pseudomonas putida KT2440 is an attractive bacterial host for biotechnological production of valuable chemicals from renewable lignocellulosic feedstocks as it can valorize lignin-derived aromatics or cellulosic glucose. P. putida EM42, a …