Daniel Schlatter
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View article: Refining the root-associated microbial consortia for enhanced biocontrol of the root-rot pathogen of corn
Refining the root-associated microbial consortia for enhanced biocontrol of the root-rot pathogen of corn Open
Microbial consortia play a crucial role in plant protection by suppressing soil-borne pathogens. A previously studied root-associated microbial consortium consisting of seven bacterial strains (C7) demonstrated biocontrol activity against …
View article: Eight Years in the Soil: Temporal Dynamics of Wheat-Associated Bacterial Communities Under Dryland and Irrigated Conditions
Eight Years in the Soil: Temporal Dynamics of Wheat-Associated Bacterial Communities Under Dryland and Irrigated Conditions Open
Plants and their associated microbiomes are impacted by environmental factors that shape their interactions over time, but long-term trends in microbial community dynamics are not well characterized. We identified the seasonal and long-ter…
View article: Foliar fungi-imposed costs to plant productivity moderate shifts in composition of the rhizosphere microbiome
Foliar fungi-imposed costs to plant productivity moderate shifts in composition of the rhizosphere microbiome Open
Plants in grasslands navigate a complex landscape of interactions including competition for resources and defense against pathogens. Foliar fungi can suppress plant growth directly through pathogenic interactions, or indirectly via host gr…
View article: Legacy Effects of Cropping System and Precipitation Influence the Core <i>Camelina sativa</i> Microbiome
Legacy Effects of Cropping System and Precipitation Influence the Core <i>Camelina sativa</i> Microbiome Open
Camelina ( Camelina sativa L.) is a potential biofuel crop and beneficial rotation crop in dryland cropping systems. Little is known about camelina microbiota or the legacy effect of soil origin/cropping system zones on camelina-associated…
View article: Plant community richness and foliar fungicides impact soil Streptomyces inhibition, resistance, and resource use phenotypes
Plant community richness and foliar fungicides impact soil Streptomyces inhibition, resistance, and resource use phenotypes Open
Plants serve as critical links between above- and below-ground microbial communitites, both influencing and being influenced by microbes in these two realms. Below-ground microbial communities are expected to respond to soil resource envir…
View article: Interactive transcriptome analyses of Northern Wild Rice (Zizania palustris L.) and Bipolaris oryzae show convoluted communications during the early stages of fungal brown spot development
Interactive transcriptome analyses of Northern Wild Rice (Zizania palustris L.) and Bipolaris oryzae show convoluted communications during the early stages of fungal brown spot development Open
Fungal diseases, caused mainly by Bipolaris spp., are past and current threats to Northern Wild Rice (NWR) grain production and germplasm preservation in both natural and cultivated settings. Genetic resistance against the pathogen is scar…
View article: Abiotic and Biotic Drivers of Soil Fungal Communities in Response to Dairy Manure Amendment
Abiotic and Biotic Drivers of Soil Fungal Communities in Response to Dairy Manure Amendment Open
Manure amendments in agricultural systems can impact soil microbial communities via supplying growth substrates for indigenous microbes or by introducing manure-borne taxa. This study explores the consistency of these impacts on soil funga…
View article: Rhizosphere and Root Community Analysis of Oomycetes Associated with Poor Alfalfa (<i>Medicago sativa</i>) Seedling Establishment
Rhizosphere and Root Community Analysis of Oomycetes Associated with Poor Alfalfa (<i>Medicago sativa</i>) Seedling Establishment Open
Alfalfa ( Medicago sativa) seeds planted in cold, wet soil are prone to seed rot, pre- and postemergence damping-off, and seedling root rot. These diseases reduce initial stand density and affect forage yields and winter survival when root…
View article: Disease-Induced Assemblage of the Rhizosphere Fungal Community in Successive Plantings of Wheat
Disease-Induced Assemblage of the Rhizosphere Fungal Community in Successive Plantings of Wheat Open
Plant is one of the primary drivers of microbial communities in the rhizosphere. The consistent presence of the same plant species over time such as monocropping in agriculture can drive significant changes in plant-associated microbiomes.…
View article: Enzyme activities distinguish long-term fertilizer effects under different soil storage methods
Enzyme activities distinguish long-term fertilizer effects under different soil storage methods Open
Long-term nitrogen fertilization imparts significant effects on the soil environment and soil microbial communities relevant to nutrient cycling. Understanding the complex interactions between soil biology, management practices, and the so…
View article: Responses of Soil Fungal Communities to Lime Application in Wheat Fields in the Pacific Northwest
Responses of Soil Fungal Communities to Lime Application in Wheat Fields in the Pacific Northwest Open
Liming is an effective agricultural practice and is broadly used to ameliorate soil acidification in agricultural ecosystems. Our understanding of the impacts of lime application on the soil fungal community is scarce. In this study, we ex…
View article: Native yeast and non-yeast fungal communities of Cabernet Sauvignon berries from two Washington State vineyards, and persistence in spontaneous fermentation
Native yeast and non-yeast fungal communities of Cabernet Sauvignon berries from two Washington State vineyards, and persistence in spontaneous fermentation Open
To address a knowledge gap about the grape berry mycobiome from Washington State vineyards, next-generation sequencing of the internal transcribed spacer region (ITS1) was used to identify native yeast and fungal species on berries of cult…
View article: Additional file 3 of Rhizosphere community selection reveals bacteria associated with reduced root disease
Additional file 3 of Rhizosphere community selection reveals bacteria associated with reduced root disease Open
Additional file 2: Table S1. Bacteria isolated from rhizosphere soil in this study.
View article: Additional file 4 of Rhizosphere community selection reveals bacteria associated with reduced root disease
Additional file 4 of Rhizosphere community selection reveals bacteria associated with reduced root disease Open
Additional file 3: Table S2. Inhibition of radial growth of soilborne pathogens in dual culture by Janthinobacterium (replicates 2 and 3).
View article: Additional file 5 of Rhizosphere community selection reveals bacteria associated with reduced root disease
Additional file 5 of Rhizosphere community selection reveals bacteria associated with reduced root disease Open
Additional file 4: Table S3. The suppression activity of Janthinobaterium against Rhizoctonia solani AG8 in greenhouse assay (replicates 2 and 3).
View article: Rhizosphere community selection reveals bacteria associated with reduced root disease
Rhizosphere community selection reveals bacteria associated with reduced root disease Open
Background: Microbes benefit plants by increasing nutrient availability, producing plant growth hormones, and protecting against pathogens. However, it is largely unknown how plants change root microbial communities.Results: In this study,…
View article: Rhizosphere community selection reveals bacteria associated with reduced root disease&nbsp;
Rhizosphere community selection reveals bacteria associated with reduced root disease Open
Background: Microbes benefit plants by increasing nutrient availability, producing plant growth hormones, and protecting against pathogens. However, it is largely unknown how plants change root microbial communities. Results: In this study…
View article: Rhizosphere Community Selection Reveals Bacteria Associated With Reduced Root Disease
Rhizosphere Community Selection Reveals Bacteria Associated With Reduced Root Disease Open
Background: Microbes benefit plants by increasing nutrient availability, producing plant growth hormones, and protecting against pathogens. However, it is largely unknown how plants change root microbial communities. Results: In this study…
View article: Core Rhizosphere Microbiomes of Dryland Wheat Are Influenced by Location and Land Use History
Core Rhizosphere Microbiomes of Dryland Wheat Are Influenced by Location and Land Use History Open
Plant-associated microbiomes are critical for plant health and other important agroecosystem processes. We assessed the bacterial and fungal microbiomes of wheat grown in soils from across a dryland wheat cropping systems in eastern Washin…
View article: Inhibitory interaction networks among coevolved Streptomyces populations from prairie soils
Inhibitory interaction networks among coevolved Streptomyces populations from prairie soils Open
Soil microbes live within highly complex communities, where community composition, function, and evolution are the product of diverse interactions among community members. Analysis of the complex networks of interactions within communities…
View article: Mining the Drilosphere: Bacterial Communities and Denitrifier Abundance in a No-Till Wheat Cropping System
Mining the Drilosphere: Bacterial Communities and Denitrifier Abundance in a No-Till Wheat Cropping System Open
Earthworms play important roles in no-till cropping systems by redistributing crop residue to lower soil horizons, providing macropores for root growth, increasing water infiltration, enhancing soil quality and organic matter, and stimulat…
View article: Mycological Insights Into Wetland Fungal Communities: The Mycobiome of <i>Camassia</i> in the Pacific Northwest
Mycological Insights Into Wetland Fungal Communities: The Mycobiome of <i>Camassia</i> in the Pacific Northwest Open
Fungal communities in ephemeral wetland habitats of the Pacific Northwest (PNW) are poorly understood. Because Camassia (camas) populations are a distinctive component of native plant communities in wetland areas of the PNW, camas plant ti…
View article: Fungal community composition and diversity vary with soil depth and landscape position in a no-till wheat-based cropping system
Fungal community composition and diversity vary with soil depth and landscape position in a no-till wheat-based cropping system Open
Soil edaphic characteristics are major drivers of fungal communities, but there is a lack of information on how communities vary with soil depth and landscape position in no-till cropping systems. Eastern Washington is dominated by dryland…