Daniel J. Upton
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View article: Demonstrating a biobased concept for the production of sustainable bacterial cellulose from mixed textile, agricultural and municipal wastes
Demonstrating a biobased concept for the production of sustainable bacterial cellulose from mixed textile, agricultural and municipal wastes Open
The fashion industry has faced increasing criticism for its unsustainable practices and needs to transition towards more circular models where renewable resources are used, and materials and chemicals are recycled. This study focuses on ab…
View article: Reconstruction of a genome-scale metabolic model and in-silico flux analysis of Aspergillus tubingensis: a non-mycotoxinogenic citric acid-producing fungus
Reconstruction of a genome-scale metabolic model and in-silico flux analysis of Aspergillus tubingensis: a non-mycotoxinogenic citric acid-producing fungus Open
Background Aspergillus tubingensis is a citric acid-producing fungus that can utilize sugars in hydrolysate of lignocellulosic biomass such as sugarcane bagasse and, unlike A. niger , does not produce mycotoxins. To date, no attempt has be…
View article: Deregulation of cellulose synthesis by site-directed mutagenesis of cellulose synthase leads to heightened bacterial cellulose production
Deregulation of cellulose synthesis by site-directed mutagenesis of cellulose synthase leads to heightened bacterial cellulose production Open
Background Bacterial cellulose produced via fermentation is a promising alternative to plant-derived cellulose with the potential to provide a sustainable source of cellulose with a significantly lower environmental footprint than unsustai…
View article: Straw digestibility in rice: Novel insights from pyrolysis GC-MS and biomass phenotyping
Straw digestibility in rice: Novel insights from pyrolysis GC-MS and biomass phenotyping Open
Valorizing rice straw could mitigate the detrimental health and environmental consequences of disposal through field burning. An essential step for achieving this is reducing straw recalcitrance to digestion by either enzymes or animals to…
View article: Marine cyanobacterial biomass is an efficient feedstock for fungal bioprocesses
Marine cyanobacterial biomass is an efficient feedstock for fungal bioprocesses Open
Background Marine cyanobacteria offer many sustainability advantages, such as the ability to fix atmospheric CO 2 , very fast growth and no dependence on freshwater for culture. Cyanobacterial biomass is a rich source of sugars and protein…
View article: Integration of Aspergillus niger transcriptomic profile with metabolic model identifies potential targets to optimise citric acid production from lignocellulosic hydrolysate
Integration of Aspergillus niger transcriptomic profile with metabolic model identifies potential targets to optimise citric acid production from lignocellulosic hydrolysate Open
Background Citric acid is typically produced industrially by Aspergillus niger -mediated fermentation of a sucrose-based feedstock, such as molasses. The fungus Aspergillus niger has the potential to utilise lignocellulosic biomass, such a…
View article: Additional file 1 of Integration of Aspergillus niger transcriptomic profile with metabolic model identifies potential targets to optimise citric acid production from lignocellulosic hydrolysate
Additional file 1 of Integration of Aspergillus niger transcriptomic profile with metabolic model identifies potential targets to optimise citric acid production from lignocellulosic hydrolysate Open
Additional file 1: The iDU1327 model presented as a spreadsheet.
View article: Intel: Interactive Toolkit For Engineering Education
Intel: Interactive Toolkit For Engineering Education Open
NOTE: The first page of text has been automatically extracted and included below in lieu of an abstract InTEL : Interactive Toolkit for Engineering Learning Abstract Statics, a foundational engineering course, introduces a unique approach …
View article: Additional file 4 of In silico evolution of Aspergillus niger organic acid production suggests strategies for switching acid output
Additional file 4 of In silico evolution of Aspergillus niger organic acid production suggests strategies for switching acid output Open
Additional file 4. A detailed complete comparison of the models iDU1756 and iJB1325.
View article: Additional file 3 of In silico evolution of Aspergillus niger organic acid production suggests strategies for switching acid output
Additional file 3 of In silico evolution of Aspergillus niger organic acid production suggests strategies for switching acid output Open
Additional file 3. The iDU1756 model in SBML format.
View article: Additional file 2 of In silico evolution of Aspergillus niger organic acid production suggests strategies for switching acid output
Additional file 2 of In silico evolution of Aspergillus niger organic acid production suggests strategies for switching acid output Open
Additional file 2. The iDU1756 model presented as a spreadsheet.
View article: Additional file 2 of In silico evolution of Aspergillus niger organic acid production suggests strategies for switching acid output
Additional file 2 of In silico evolution of Aspergillus niger organic acid production suggests strategies for switching acid output Open
Additional file 2. The iDU1756 model presented as a spreadsheet.
View article: Additional file 3 of In silico evolution of Aspergillus niger organic acid production suggests strategies for switching acid output
Additional file 3 of In silico evolution of Aspergillus niger organic acid production suggests strategies for switching acid output Open
Additional file 3. The iDU1756 model in SBML format.
View article: Additional file 3 of In silico evolution of Aspergillus niger organic acid production suggests strategies for switching acid output
Additional file 3 of In silico evolution of Aspergillus niger organic acid production suggests strategies for switching acid output Open
Additional file 3. The iDU1756 model in SBML format.
View article: Additional file 2 of In silico evolution of Aspergillus niger organic acid production suggests strategies for switching acid output
Additional file 2 of In silico evolution of Aspergillus niger organic acid production suggests strategies for switching acid output Open
Additional file 2. The iDU1756 model presented as a spreadsheet.
View article: Additional file 4 of In silico evolution of Aspergillus niger organic acid production suggests strategies for switching acid output
Additional file 4 of In silico evolution of Aspergillus niger organic acid production suggests strategies for switching acid output Open
Additional file 4. A detailed complete comparison of the models iDU1756 and iJB1325.
View article: Additional file 4 of In silico evolution of Aspergillus niger organic acid production suggests strategies for switching acid output
Additional file 4 of In silico evolution of Aspergillus niger organic acid production suggests strategies for switching acid output Open
Additional file 4. A detailed complete comparison of the models iDU1756 and iJB1325.
View article: An accurate description of Aspergillus niger organic acid batch fermentation through dynamic metabolic modelling
An accurate description of Aspergillus niger organic acid batch fermentation through dynamic metabolic modelling Open
The calibrated time-course model reflects observed metabolic events and generates reliable in silico data for industrially relevant fermentative time series, and for the behaviour of engineered strains suggesting that our approach can be u…
View article: In silico guided metabolic engineering of Aspergillus niger for sustainable organic acid production
In silico guided metabolic engineering of Aspergillus niger for sustainable organic acid production Open
The filamentous fungus Aspergillus niger is a common mould, and has risen to worldwide impact through industrial fermentation that is the chief source of the world’s citric acid. As well as the high market value chemical citric acid, A. ni…
View article: An improved cognitive model of the Iowa and Soochow Gambling Tasks with regard to model fitting performance and tests of parameter consistency
An improved cognitive model of the Iowa and Soochow Gambling Tasks with regard to model fitting performance and tests of parameter consistency Open
The Iowa Gambling Task (IGT) and the Soochow Gambling Task (SGT) are two experience-based risky decision-making tasks for examining decision-making deficits in clinical populations. Several cognitive models, including the expectancy-valenc…