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View article: MetaTransformer: deep metagenomic sequencing read classification using self-attention models
MetaTransformer: deep metagenomic sequencing read classification using self-attention models Open
Deep learning has emerged as a paradigm that revolutionizes numerous domains of scientific research. Transformers have been utilized in language modeling outperforming previous approaches. Therefore, the utilization of deep learning as a t…
View article: MetaCache-GPU: Ultra-Fast Metagenomic Classification
MetaCache-GPU: Ultra-Fast Metagenomic Classification Open
The cost of DNA sequencing has dropped exponentially over the past decade, making genomic data accessible to a growing number of scientists. In bioinformatics, localization of short DNA sequences (reads) within large genomic sequences is c…
View article: WarpCore: A Library for fast Hash Tables on GPUs
WarpCore: A Library for fast Hash Tables on GPUs Open
Hash tables are ubiquitous. Properties such as an amortized constant time complexity for insertion and querying as well as a compact memory layout make them versatile associative data structures with manifold applications. The rapidly grow…
View article: 27th IEEE International Conference on High Performance Computing, Data, and Analytics (HiPC 2020) Technical program
27th IEEE International Conference on High Performance Computing, Data, and Analytics (HiPC 2020) Technical program Open
HiPC 2020 is the 27th edition of the IEEE International Conference on High Performance Computing, Data, and Analytics.The conference focus is not only HPC but also includes Data Science.Due to the COVID-19 pandemic, this year the conferenc…