Daniel Mamott
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View article: Advancing inflammasome research: No-wash immunoassays for active IL-18 and gasdermin D-mediated pyroptosis detection 3596
Advancing inflammasome research: No-wash immunoassays for active IL-18 and gasdermin D-mediated pyroptosis detection 3596 Open
Description Effective tools for monitoring inflammasome activation are crucial for understanding its role in immune function and advancing drug discovery efforts. We previously developed high throughput-amenable assays for caspase-1 activa…
View article: A High-Quality Blue Whale Genome, Segmental Duplications, and Historical Demography
A High-Quality Blue Whale Genome, Segmental Duplications, and Historical Demography Open
The blue whale, Balaenoptera musculus, is the largest animal known to have ever existed, making it an important case study in longevity and resistance to cancer. To further this and other blue whale-related research, we report a reference-…
View article: Chromosome level genome assembly of the Etruscan shrew Suncus etruscus
Chromosome level genome assembly of the Etruscan shrew Suncus etruscus Open
Suncus etruscus is one of the world’s smallest mammals, with an average body mass of about 2 grams. The Etruscan shrew’s small body is accompanied by a very high energy demand and numerous metabolic adaptations. Here we report a chromosome…
View article: Efficient derivation of transgene-free porcine induced pluripotent stem cells enables in vitro modeling of species-specific developmental timing
Efficient derivation of transgene-free porcine induced pluripotent stem cells enables in vitro modeling of species-specific developmental timing Open
Sus scrofa domesticus (pig) has served as a superb large mammalian model for biomedical studies because of its comparable physiology and organ size to humans. The derivation of transgene-free porcine induced pluripotent stem cells (PiPSCs)…
View article: Interrogating direct NLRP3 engagement and functional inflammasome inhibition using cellular assays
Interrogating direct NLRP3 engagement and functional inflammasome inhibition using cellular assays Open
As a key regulator of the innate immune system, the NLRP3 inflammasome responds to a variety of environmental insults through activation of caspase-1 and release of the proinflammatory cytokines IL-1β and IL-18. Aberrant NLRP3 inflammasome…
View article: Development of a specific, active human IL-18 assay for assessing inflammasome activation
Development of a specific, active human IL-18 assay for assessing inflammasome activation Open
Interleukin-18 (IL-18) was first identified for its ability to induce interferon-γ expression. IL-18 is a proinflammatory cytokine and its release along with IL-1β is a primary output of inflammasome activation. We have developed convenien…
View article: A high-quality blue whale genome, segmental duplications, and historical demography
A high-quality blue whale genome, segmental duplications, and historical demography Open
BackgroundThe blue whale, Balaenoptera musculus , is the largest animal known to have ever existed. Body size is tightly coupled to cell metabolism and environmental adaptations. A high-quality genome assembly of this magnificent animal wi…
View article: Engineered Perineural Vascular Plexus for Modeling Developmental Toxicity
Engineered Perineural Vascular Plexus for Modeling Developmental Toxicity Open
There is a vital need to develop in vitro models of the developing human brain to recapitulate the biological effects that toxic compounds have on the brain. To model perineural vascular plexus (PNVP) in vitro, which is a key stage in embr…
View article: Additional file 2: Table S1. of Single-cell RNA-seq reveals novel regulators of human embryonic stem cell differentiation to definitive endoderm
Additional file 2: Table S1. of Single-cell RNA-seq reveals novel regulators of human embryonic stem cell differentiation to definitive endoderm Open
List of genes used in Fig. 1c for hierarchical clustering. (XLSX 30 kb)
View article: Additional file 9: Table S8. of Single-cell RNA-seq reveals novel regulators of human embryonic stem cell differentiation to definitive endoderm
Additional file 9: Table S8. of Single-cell RNA-seq reveals novel regulators of human embryonic stem cell differentiation to definitive endoderm Open
List of the DNA oligos and qPCR assays used in this study. (XLSX 32 kb)
View article: Additional file 8: Table S7. of Single-cell RNA-seq reveals novel regulators of human embryonic stem cell differentiation to definitive endoderm
Additional file 8: Table S7. of Single-cell RNA-seq reveals novel regulators of human embryonic stem cell differentiation to definitive endoderm Open
List of the antibodies used in this study. (XLSX 43 kb)
View article: Additional file 7: Table S6. of Single-cell RNA-seq reveals novel regulators of human embryonic stem cell differentiation to definitive endoderm
Additional file 7: Table S6. of Single-cell RNA-seq reveals novel regulators of human embryonic stem cell differentiation to definitive endoderm Open
List of kernel signals for Wave-Crest simulation studies. (XLSX 21 kb)
View article: Additional file 10: Table S9. of Single-cell RNA-seq reveals novel regulators of human embryonic stem cell differentiation to definitive endoderm
Additional file 10: Table S9. of Single-cell RNA-seq reveals novel regulators of human embryonic stem cell differentiation to definitive endoderm Open
List of the siRNA used in this study. (XLSX 46 kb)
View article: Additional file 6: Table S5. of Single-cell RNA-seq reveals novel regulators of human embryonic stem cell differentiation to definitive endoderm
Additional file 6: Table S5. of Single-cell RNA-seq reveals novel regulators of human embryonic stem cell differentiation to definitive endoderm Open
List of the top 150 genes identified by Wave-Crest fishing step. (XLSX 56 kb)
View article: Additional file 4: Table S3. of Single-cell RNA-seq reveals novel regulators of human embryonic stem cell differentiation to definitive endoderm
Additional file 4: Table S3. of Single-cell RNA-seq reveals novel regulators of human embryonic stem cell differentiation to definitive endoderm Open
List of SCPattern identified stage-specific 3247 genes. (XLSX 167 kb)
View article: Additional file 5: Table S4. of Single-cell RNA-seq reveals novel regulators of human embryonic stem cell differentiation to definitive endoderm
Additional file 5: Table S4. of Single-cell RNA-seq reveals novel regulators of human embryonic stem cell differentiation to definitive endoderm Open
List of 2178 genes used for Wave-Crest fishing step. (XLSX 54 kb)
View article: Additional file 3: Table S2. of Single-cell RNA-seq reveals novel regulators of human embryonic stem cell differentiation to definitive endoderm
Additional file 3: Table S2. of Single-cell RNA-seq reveals novel regulators of human embryonic stem cell differentiation to definitive endoderm Open
List of the GO terms by Allez enrichment analysis. (XLSX 62 kb)