Danrui Wang
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View article: Phage‐mediated horizontal transfer of <i>Salmonella enterica</i> virulence genes with regulatory feedback from the host
Phage‐mediated horizontal transfer of <i>Salmonella enterica</i> virulence genes with regulatory feedback from the host Open
Phage‐mediated horizontal transfer of virulence genes can enhance the transmission and pathogenicity of Salmonella enterica ( S. enterica ), a process potentially regulated by its regulatory mechanisms. In this study, we explored the globa…
View article: Expanding the potential soil carbon sink: unraveling carbon sequestration accessory genes in vermicompost phages
Expanding the potential soil carbon sink: unraveling carbon sequestration accessory genes in vermicompost phages Open
The compost microbiome is important in regulating soil carbon sequestration. However, there is limited information concerning phage communities and phage-encoded auxiliary metabolic genes (AMGs) in compost-applied soils. We combined metage…
View article: Bacteriophage–Bacteria Interactions Promote Ecological Multifunctionality in Compost‐Applied Soils
Bacteriophage–Bacteria Interactions Promote Ecological Multifunctionality in Compost‐Applied Soils Open
Bacteriophages (phages) influence biogeochemical cycling in soil ecosystems by mediating bacterial metabolism. However, the participation of phages in soil's overall ecological functions (multifunctionality) remains unclear. Hence, this st…
View article: Developing a microfluidic‐based epicPCR reveals diverse potential hosts of the <i>mcrA</i> gene in marine cold seep
Developing a microfluidic‐based epicPCR reveals diverse potential hosts of the <i>mcrA</i> gene in marine cold seep Open
Anaerobic methanotrophic (ANME) microbes play a crucial role in the bioprocess of anaerobic oxidation of methane (AOM). However, due to their unculturable status, their diversity is poorly understood. In this study, we established a microf…
View article: Unveiling the deterministic dynamics of microbial meta-metabolism: a multi-omics investigation of anaerobic biodegradation
Unveiling the deterministic dynamics of microbial meta-metabolism: a multi-omics investigation of anaerobic biodegradation Open
All results revealed three key rules governing microbial anaerobic degradation. These rules indicate that microbes adapt to environmental conditions according to their community-level metabolic trade-offs and synergistic metabolic function…
View article: CoBacFM: Core bacteria forecast model for global grassland pH dynamics under future climate warming scenarios
CoBacFM: Core bacteria forecast model for global grassland pH dynamics under future climate warming scenarios Open
Soil microbes regulate various biogeochemical cycles on Earth and respond rapidly to climate change, which is accompanied by changes in soil pH. However, the long-term patterns of these changes under future climate scenarios remain unclear…
View article: Phylogenetic diversity of functional genes in deep-sea cold seeps: a novel perspective on metagenomics
Phylogenetic diversity of functional genes in deep-sea cold seeps: a novel perspective on metagenomics Open
Background Leakages of cold, methane-rich fluids from subsurface reservoirs to the sea floor are termed cold seeps. Recent exploration of the deep sea has shed new light on the microbial communities in cold seeps. However, conventional met…
View article: High speciation rate of niche specialists in hot springs
High speciation rate of niche specialists in hot springs Open
Ecological and evolutionary processes simultaneously regulate microbial diversity, but the evolutionary processes and their driving forces remain largely unexplored. Here we investigated the ecological and evolutionary characteristics of m…
View article: The Stability of Phyto-Zooplanktonic Networks Varied with Zooplanktonic Sizes in Chinese Coastal Ecosystem
The Stability of Phyto-Zooplanktonic Networks Varied with Zooplanktonic Sizes in Chinese Coastal Ecosystem Open
Body size is a key life trait of aquatic plankton that affects organisms’ metabolic rates and ecological functions; however, its specific effects on interactions between phytoplankton and zooplankton are poorly understood. We collected pla…
View article: Evaluation and redesign of the primers for detecting nitrogen cycling genes in environments
Evaluation and redesign of the primers for detecting nitrogen cycling genes in environments Open
A better understanding of how nitrogen (N) cycling genes are involved in ecological processes is one of the crucial areas of microbial ecology. Currently, most molecular biological techniques investigating N cycling genes in the environmen…
View article: iNAP: An integrated network analysis pipeline for microbiome studies
iNAP: An integrated network analysis pipeline for microbiome studies Open
Integrated network analysis pipeline (iNAP) is an online analysis pipeline for generating and analyzing comprehensive ecological networks in microbiome studies. It is implemented in two sections, that is, network construction and network a…
View article: Steeper spatial scaling patterns of subsoil microbiota are shaped by deterministic assembly process
Steeper spatial scaling patterns of subsoil microbiota are shaped by deterministic assembly process Open
Although many studies have investigated the spatial scaling of microbial communities living in surface soils, very little is known about the patterns within deeper strata, nor is the mechanism behind them. Here, we systematically assessed …