Davide Heller
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Tree reconciliation combined with subsampling improves large scale inference of orthologous group hierarchies Open
Background An orthologous group (OG) comprises a set of orthologous and paralogous genes that share a last common ancestor (LCA). OGs are defined with respect to a chosen taxonomic level, which delimits the position of the LCA in time to a…
Additional file 6 of Tree reconciliation combined with subsampling improves large scale inference of orthologous group hierarchies Open
Supplementary data table for the Quest for Orthologs benchmark containing the underlying data to Additional file 4: Figure S4. (XLSX 18 kb)
View article: eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses
eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses Open
eggNOG is a public database of orthology relationships, gene evolutionary histories and functional annotations. Here, we present version 5.0, featuring a major update of the underlying genome sets, which have been expanded to 4445 represen…
Tree reconciliation combined with subsampling improves large scale inference of orthologous group hierarchies Open
Background An orthologous group (OG) comprises a set of orthologous and paralogous genes that share a last common ancestor (LCA). OGs are defined with respect to a chosen taxonomic level, which delimits the position of the LCA in time to a…
Gearing up to handle the mosaic nature of life in the quest for orthologs Open
Summary: The Quest for Orthologs (QfO) is an open collaboration framework for experts in comparative phylogenomics and related research areas who have an interest in highly accurate orthology predictions and their applications. We here rep…