Stephen D. B. Jr. Ramnarine
YOU?
Author Swipe
View article: Early transcriptional changes of heavy metal resistance and multiple efflux genes in Xanthomonas campestris pv. campestris under copper and heavy metal ion stress
Early transcriptional changes of heavy metal resistance and multiple efflux genes in Xanthomonas campestris pv. campestris under copper and heavy metal ion stress Open
Background Copper-induced gene expression in Xanthomonas campestris pv. campestris (Xcc) is typically evaluated using targeted approaches involving qPCR. The global response to copper stress in Xcc and resistance to metal induced damage is…
View article: <i>copLAB</i> gene prevalence and diversity among Trinidadian <i>Xanthomonas</i> spp. black-rot lesion isolates with variable copper resistance profiles
<i>copLAB</i> gene prevalence and diversity among Trinidadian <i>Xanthomonas</i> spp. black-rot lesion isolates with variable copper resistance profiles Open
Background There has been limited exploration of copLAB genotypes and associated copper resistance phenotypes in Xanthomonas spp. in the southern Caribbean region. An earlier study highlighted a variant copLAB gene cluster found in one Tri…
View article: Peer Review #1 of "copLAB gene prevalence and diversity among Trinidadian Xanthomonas spp. black-rot lesion isolates with variable copper resistance profiles (v0.1)"
Peer Review #1 of "copLAB gene prevalence and diversity among Trinidadian Xanthomonas spp. black-rot lesion isolates with variable copper resistance profiles (v0.1)" Open
Background: There has been limited exploration of copLAB genotypes and associated copper resistance phenotypes in Xanthomonas sp. in the southern Caribbean region.An earlier study highlighted a variant copLAB gene cluster found in one Trin…
View article: Peer Review #1 of "copLAB gene prevalence and diversity among Trinidadian Xanthomonas spp. black-rot lesion isolates with variable copper resistance profiles (v0.2)"
Peer Review #1 of "copLAB gene prevalence and diversity among Trinidadian Xanthomonas spp. black-rot lesion isolates with variable copper resistance profiles (v0.2)" Open
Background: There has been limited exploration of copLAB genotypes and associated copper resistance phenotypes in Xanthomonas sp. in the southern Caribbean region.An earlier study highlighted a variant copLAB gene cluster found in one Trin…
View article: 16s rRNA and copLAB partial sequences of copper resistant Xanthomonas spp. isolated from agrochemical impacted crucifer fields in Trinidad
16s rRNA and copLAB partial sequences of copper resistant Xanthomonas spp. isolated from agrochemical impacted crucifer fields in Trinidad Open
Sanger sequence generated partial sequences of copLAB genes present in copper resistant Xanthomonas spp associated with leaf lesion and 16s rRNA sequences used for bacterial genera identification. Part of an upcoming manuscript, will be li…
View article: 16s rRNA and copLAB partial sequences of copper resistant Xanthomonas spp. isolated from agrochemical impacted crucifer fields in Trinidad
16s rRNA and copLAB partial sequences of copper resistant Xanthomonas spp. isolated from agrochemical impacted crucifer fields in Trinidad Open
Sanger sequence generated partial sequences of copLAB genes present in copper resistant Xanthomonas spp associated with leaf lesion and 16s rRNA sequences used for bacterial genera identification. Part of an upcoming manuscript, will be li…
View article: Xcc BrA1 re-sequenced genome contigs, annotation file and Trinitiy De-nove assembled DEG's
Xcc BrA1 re-sequenced genome contigs, annotation file and Trinitiy De-nove assembled DEG's Open
Assembled genome contigs of Xcc strain BrA1 (Behlau et al 2017) which was re-sequenced by our lab and used in a copper stress Transcriptome study. A hybrid RNA-seq analysis pipeline was used and the DEG Trinity De-novo assembled transcript…
View article: Xcc BrA1 re-sequenced genome contigs, annotation file and Trinitiy De-nove assembled DEG's
Xcc BrA1 re-sequenced genome contigs, annotation file and Trinitiy De-nove assembled DEG's Open
Assembled genome contigs of Xcc strain BrA1 (Behlau et al 2017) which was re-sequenced by our lab and used in a copper stress Transcriptome study. A hybrid RNA-seq analysis pipeline was used and the DEG Trinity De-novo assembled transcript…
View article: Xcc BrA1 re-sequenced genome contigs, annotation file and Trinitiy De-nove assembled DEG's
Xcc BrA1 re-sequenced genome contigs, annotation file and Trinitiy De-nove assembled DEG's Open
Assembled genome contigs of Xcc strain BrA1 (Behlau et al 2017) which was re-sequenced by our lab and used in a copper stress Transcriptome study. A hybrid RNA-seq analysis pipeline was used and the DEG Trinity De-novo assembled transcript…
View article: Xcc BrA1 re-sequenced genome contigs, annotation file and Trinitiy De-nove assembled DEG's
Xcc BrA1 re-sequenced genome contigs, annotation file and Trinitiy De-nove assembled DEG's Open
Assembled genome contigs of Xcc strain BrA1 (Behlau et al 2017) which was re-sequenced by our lab and used in a copper stress Transcriptome study. A hybrid RNA-seq analysis pipeline was used and the DEG Trinity De-novo assembled transcript…
View article: Comparative genomics of the black rot pathogen <i>Xanthomonas campestris</i> pv. <i>campestris</i> and non-pathogenic co-inhabitant <i>Xanthomonas melonis</i> from Trinidad reveal unique pathogenicity determinants and secretion system profiles
Comparative genomics of the black rot pathogen <i>Xanthomonas campestris</i> pv. <i>campestris</i> and non-pathogenic co-inhabitant <i>Xanthomonas melonis</i> from Trinidad reveal unique pathogenicity determinants and secretion system profiles Open
Black-rot disease caused by the phytopathogen Xanthomonas campestris pv. campestris (Xcc) continues to have considerable impacts on the productivity of cruciferous crops in Trinidad and Tobago and the wider Caribbean region. While the wide…
View article: Peer Review #2 of "Comparative genomics of the black rot pathogen Xanthomonas campestris pv. campestris and non-pathogenic co-inhabitant Xanthomonas melonis from Trinidad reveal unique pathogenicity determinants and secretion system profiles (v0.1)"
Peer Review #2 of "Comparative genomics of the black rot pathogen Xanthomonas campestris pv. campestris and non-pathogenic co-inhabitant Xanthomonas melonis from Trinidad reveal unique pathogenicity determinants and secretion system profiles (v0.1)" Open
Black-rot disease caused by the phytopathogen Xanthomonas campestris pv.campestris (Xcc) continues to have considerable impacts on the productivity of cruciferous crops in Trinidad and Tobago and the wider Caribbean region.While the widesp…
View article: Recombination and In-silico protein modelling and functional characterization of copLAB genes from Trinidadian Xanthomonas campestris and melonis isolates
Recombination and In-silico protein modelling and functional characterization of copLAB genes from Trinidadian Xanthomonas campestris and melonis isolates Open
RDP, GARD, RaptorX and InterProScan outputs relating to the publication tentatively titled "Heavy metal resistance islands associated with a putative Tn in Trinidadian copper resistant Xanthomonas campestris and melonis strains are strongl…
View article: Recombination and In-silico protein modelling and functional characterization of copLAB genes from Trinidadian Xanthomonas campestris and melonis isolates
Recombination and In-silico protein modelling and functional characterization of copLAB genes from Trinidadian Xanthomonas campestris and melonis isolates Open
RDP, GARD, RaptorX and InterProScan outputs relating to the publication tentatively titled "Heavy metal resistance islands associated with a putative Tn in Trinidadian copper resistant Xanthomonas campestris and melonis strains are strongl…
View article: RDP and GARD recombination analysis of Trinidadian variant copLAB genes from native Xanthomonas campestris isolates
RDP and GARD recombination analysis of Trinidadian variant copLAB genes from native Xanthomonas campestris isolates Open
Datasets relating to recombination analysis of Trinidadian Xanthomonas campestris variant copLAB genes
View article: Recombination and In-silico protein modelling and functional characterization of copLAB genes from Trinidadian Xanthomonas campestris and melonis isolates
Recombination and In-silico protein modelling and functional characterization of copLAB genes from Trinidadian Xanthomonas campestris and melonis isolates Open
RDP, GARD, RaptorX and InterProScan outputs relating to the publication tentatively titled "Heavy metal resistance islands associated with a putative Tn in Trinidadian copper resistant Xanthomonas campestris and melonis strains are strongl…