Deborah Schmidt
YOU?
Author Swipe
View article: Structure, interaction and nervous connectivity of beta cell primary cilia
Structure, interaction and nervous connectivity of beta cell primary cilia Open
Primary cilia are sensory organelles present in many cell types, partaking in various signaling processes. Primary cilia of pancreatic beta cells play pivotal roles in paracrine signaling and their dysfunction is linked to diabetes. Yet, t…
View article: Polarity-JaM: An image analysis toolbox for cell polarity, junction and morphology quantification
Polarity-JaM: An image analysis toolbox for cell polarity, junction and morphology quantification Open
Cell polarity involves the asymmetric distribution of cellular components such as signaling molecules and organelles within a cell, asymmetries of a cell”s shape as well as contacts with neighbouring cells. Gradients and mechanical forces …
View article: VoltRon: A Spatial Omics Analysis Platform for Multi-Resolution and Multi-omics Integration using Image Registration
VoltRon: A Spatial Omics Analysis Platform for Multi-Resolution and Multi-omics Integration using Image Registration Open
The growing number of spatial omic technologies have created a demand for computational tools capable of managing, storing, and analyzing spatial datasets with multiple modalities and spatial resolutions. Meanwhile, computer vision is beco…
View article: Example FIB-SEM datasets for segmentation, spatial analysis, and visualization of volume electron microscopy datasets
Example FIB-SEM datasets for segmentation, spatial analysis, and visualization of volume electron microscopy datasets Open
This record contains demo FIB-SEM raw data and segmentation masks for the protocol paper: Müller et al. A modular protocol for segmentation, spatial analysis, and visualization of volume electron microscopy datasets It contains - `high_c1_…
View article: BioImage Model Zoo: A Community-Driven Resource for Accessible Deep Learning in BioImage Analysis
BioImage Model Zoo: A Community-Driven Resource for Accessible Deep Learning in BioImage Analysis Open
Deep learning-based approaches are revolutionizing imaging-driven scientific research. However, the accessibility and reproducibility of deep learning-based workflows for imaging scientists remain far from sufficient. Several tools have re…
View article: Gradle template for Java 11
Gradle template for Java 11 Open
An Album solution template running Java code via Gradle.
View article: LABKIT: Labeling and Segmentation Toolkit for Big Image Data
LABKIT: Labeling and Segmentation Toolkit for Big Image Data Open
We present LABKIT, a user-friendly Fiji plugin for the segmentation of microscopy image data. It offers easy to use manual and automated image segmentation routines that can be rapidly applied to single- and multi-channel images as well as…
View article: Labkit: Labeling and Segmentation Toolkit for Big Image Data
Labkit: Labeling and Segmentation Toolkit for Big Image Data Open
We present L abkit , a user-friendly Fiji plugin for the segmentation of microscopy image data. It offers easy to use manual and automated image segmentation routines that can be rapidly applied to single- and multi-channel images as well …
View article: 3D FIB-SEM reconstruction of microtubule–organelle interaction in whole primary mouse β cells
3D FIB-SEM reconstruction of microtubule–organelle interaction in whole primary mouse β cells Open
Microtubules play a major role in intracellular trafficking of vesicles in endocrine cells. Detailed knowledge of microtubule organization and their relation to other cell constituents is crucial for understanding cell function. However, t…
View article: 3D FIB-SEM reconstruction of microtubule-organelle interaction in whole primary mouse beta cells
3D FIB-SEM reconstruction of microtubule-organelle interaction in whole primary mouse beta cells Open
Microtubules play a major role in intracellular trafficking of vesicles in endocrine cells. Detailed knowledge of microtubule organization and their relation to other cell constituents is crucial for understanding cell function. However, t…
View article: Mouse (noise 10) dataset for microscopy image denoising and segmentation benchmark as used in DenoiSeg paper (https://arxiv.org/abs/2005.02987)
Mouse (noise 10) dataset for microscopy image denoising and segmentation benchmark as used in DenoiSeg paper (https://arxiv.org/abs/2005.02987) Open
Mouse n10 dataset for microscopy image denoising and segmentation benchmark as used in DenoiSeg paper (https://arxiv.org/abs/2005.02987)
View article: Flywing (noise 20) dataset for microscopy image denoising and segmentation benchmark as used in DenoiSeg paper (https://arxiv.org/abs/2005.02987)
Flywing (noise 20) dataset for microscopy image denoising and segmentation benchmark as used in DenoiSeg paper (https://arxiv.org/abs/2005.02987) Open
Flywing n20 dataset for microscopy image denoising and segmentation benchmark as used in DenoiSeg paper (https://arxiv.org/abs/2005.02987)
View article: Mouse (noise 20) dataset for microscopy image denoising and segmentation benchmark as used in DenoiSeg paper (https://arxiv.org/abs/2005.02987)
Mouse (noise 20) dataset for microscopy image denoising and segmentation benchmark as used in DenoiSeg paper (https://arxiv.org/abs/2005.02987) Open
Mouse n20 dataset for microscopy image denoising and segmentation benchmark as used in DenoiSeg paper (https://arxiv.org/abs/2005.02987)
View article: DSB (noise 0) dataset for microscopy image denoising and segmentation benchmark as used in DenoiSeg paper (https://arxiv.org/abs/2005.02987)
DSB (noise 0) dataset for microscopy image denoising and segmentation benchmark as used in DenoiSeg paper (https://arxiv.org/abs/2005.02987) Open
DSB n0 dataset for microscopy image denoising and segmentation benchmark as used in DenoiSeg paper (https://arxiv.org/abs/2005.02987)
View article: DSB (noise 10) dataset for microscopy image denoising and segmentation benchmark as used in DenoiSeg paper (https://arxiv.org/abs/2005.02987)
DSB (noise 10) dataset for microscopy image denoising and segmentation benchmark as used in DenoiSeg paper (https://arxiv.org/abs/2005.02987) Open
DSB n10 dataset for microscopy image denoising and segmentation benchmark as used in DenoiSeg paper (https://arxiv.org/abs/2005.02987)
View article: Mouse (noise 0) dataset for microscopy image denoising and segmentation benchmark as used in DenoiSeg paper (https://arxiv.org/abs/2005.02987)
Mouse (noise 0) dataset for microscopy image denoising and segmentation benchmark as used in DenoiSeg paper (https://arxiv.org/abs/2005.02987) Open
Mouse n0 dataset for microscopy image denoising and segmentation benchmark as used in DenoiSeg paper (https://arxiv.org/abs/2005.02987)
View article: DSB (noise 20) dataset for microscopy image denoising and segmentation benchmark as used in DenoiSeg paper (https://arxiv.org/abs/2005.02987)
DSB (noise 20) dataset for microscopy image denoising and segmentation benchmark as used in DenoiSeg paper (https://arxiv.org/abs/2005.02987) Open
DSB n20 dataset for microscopy image denoising and segmentation benchmark as used in DenoiSeg paper (https://arxiv.org/abs/2005.02987)
View article: Mouse (noise 0) dataset for microscopy image denoising and segmentation benchmark as used in DenoiSeg paper (https://arxiv.org/abs/2005.02987)
Mouse (noise 0) dataset for microscopy image denoising and segmentation benchmark as used in DenoiSeg paper (https://arxiv.org/abs/2005.02987) Open
Mouse n0 dataset for microscopy image denoising and segmentation benchmark as used in DenoiSeg paper (https://arxiv.org/abs/2005.02987)
View article: Flywing (noise 10) dataset for microscopy image denoising and segmentation benchmark as used in DenoiSeg paper (https://arxiv.org/abs/2005.02987)
Flywing (noise 10) dataset for microscopy image denoising and segmentation benchmark as used in DenoiSeg paper (https://arxiv.org/abs/2005.02987) Open
Flywing n10 dataset for microscopy image denoising and segmentation benchmark as used in DenoiSeg paper (https://arxiv.org/abs/2005.02987)
View article: Mouse (noise 10) dataset for microscopy image denoising and segmentation benchmark as used in DenoiSeg paper (https://arxiv.org/abs/2005.02987)
Mouse (noise 10) dataset for microscopy image denoising and segmentation benchmark as used in DenoiSeg paper (https://arxiv.org/abs/2005.02987) Open
Mouse n10 dataset for microscopy image denoising and segmentation benchmark as used in DenoiSeg paper (https://arxiv.org/abs/2005.02987)
View article: Flywing (noise 20) dataset for microscopy image denoising and segmentation benchmark as used in DenoiSeg paper (https://arxiv.org/abs/2005.02987)
Flywing (noise 20) dataset for microscopy image denoising and segmentation benchmark as used in DenoiSeg paper (https://arxiv.org/abs/2005.02987) Open
Flywing n20 dataset for microscopy image denoising and segmentation benchmark as used in DenoiSeg paper (https://arxiv.org/abs/2005.02987)
View article: Flywing (noise 0) dataset for microscopy image denoising and segmentation benchmark as used in DenoiSeg paper (https://arxiv.org/abs/2005.02987)
Flywing (noise 0) dataset for microscopy image denoising and segmentation benchmark as used in DenoiSeg paper (https://arxiv.org/abs/2005.02987) Open
Flywing n0 dataset for microscopy image denoising and segmentation benchmark as used in DenoiSeg paper (https://arxiv.org/abs/2005.02987)
View article: DSB (noise 0) dataset for microscopy image denoising and segmentation benchmark as used in DenoiSeg paper (https://arxiv.org/abs/2005.02987)
DSB (noise 0) dataset for microscopy image denoising and segmentation benchmark as used in DenoiSeg paper (https://arxiv.org/abs/2005.02987) Open
DSB n0 dataset for microscopy image denoising and segmentation benchmark as used in DenoiSeg paper (https://arxiv.org/abs/2005.02987)
View article: Flywing (noise 0) dataset for microscopy image denoising and segmentation benchmark as used in DenoiSeg paper (https://arxiv.org/abs/2005.02987)
Flywing (noise 0) dataset for microscopy image denoising and segmentation benchmark as used in DenoiSeg paper (https://arxiv.org/abs/2005.02987) Open
Flywing n0 dataset for microscopy image denoising and segmentation benchmark as used in DenoiSeg paper (https://arxiv.org/abs/2005.02987)
View article: DSB (noise 20) dataset for microscopy image denoising and segmentation benchmark as used in DenoiSeg paper (https://arxiv.org/abs/2005.02987)
DSB (noise 20) dataset for microscopy image denoising and segmentation benchmark as used in DenoiSeg paper (https://arxiv.org/abs/2005.02987) Open
DSB n20 dataset for microscopy image denoising and segmentation benchmark as used in DenoiSeg paper (https://arxiv.org/abs/2005.02987)
View article: DSB (noise 10) dataset for microscopy image denoising and segmentation benchmark as used in DenoiSeg paper (https://arxiv.org/abs/2005.02987)
DSB (noise 10) dataset for microscopy image denoising and segmentation benchmark as used in DenoiSeg paper (https://arxiv.org/abs/2005.02987) Open
DSB n10 dataset for microscopy image denoising and segmentation benchmark as used in DenoiSeg paper (https://arxiv.org/abs/2005.02987)
View article: Flywing (noise 10) dataset for microscopy image denoising and segmentation benchmark as used in DenoiSeg paper (https://arxiv.org/abs/2005.02987)
Flywing (noise 10) dataset for microscopy image denoising and segmentation benchmark as used in DenoiSeg paper (https://arxiv.org/abs/2005.02987) Open
Flywing n10 dataset for microscopy image denoising and segmentation benchmark as used in DenoiSeg paper (https://arxiv.org/abs/2005.02987)