Véronique Decroocq
YOU?
Author Swipe
View article: Insights Into the Almond Domestication History
Insights Into the Almond Domestication History Open
Understanding crop domestication offers crucial insights into the evolutionary processes that drive population divergence and adaptation. It also informs the identification of genetically diverse wild germplasm, which is essential for bree…
View article: Genomic footprints of domestication in almond (<i>Prunus dulcis</i>)
Genomic footprints of domestication in almond (<i>Prunus dulcis</i>) Open
The domestication of perennial crops in the Mediterranean Basin remains unclear, particularly regarding the genomic consequences of human-mediated demographic shifts and selection. We analyzed 8.1 million single nucleotide polymorphisms fr…
View article: Building pangenomes for domesticated and wild tree species: genomic complexity and strategies
Building pangenomes for domesticated and wild tree species: genomic complexity and strategies Open
Long-read sequencing and pangenomics are revolutionizing crop research by providing more complete genome information and revealing crucial structural variations linked to important agricultural traits. Building on recent advances in intras…
View article: Estimation of contemporary effective population size in plant populations: Limitations of genomic datasets
Estimation of contemporary effective population size in plant populations: Limitations of genomic datasets Open
Effective population size ( N e ) is a pivotal evolutionary parameter with crucial implications in conservation practice and policy. Genetic methods to estimate N e have been preferred over demographic methods because they rely on genetic …
View article: Allele mining of eukaryotic translation initiation factor genes in Prunus for the identification of new sources of resistance to sharka
Allele mining of eukaryotic translation initiation factor genes in Prunus for the identification of new sources of resistance to sharka Open
View article: Estimation of contemporary effective population size in plant populations: limitations of genomic datasets
Estimation of contemporary effective population size in plant populations: limitations of genomic datasets Open
Effective population size ( N e ) is a pivotal evolutionary parameter with crucial implications in conservation practice and policy. Genetic methods to estimate N e have been preferred over demographic methods because they rely on genetic …
View article: Prunus armeniaca SNPs dataset
Prunus armeniaca SNPs dataset Open
-"armeniaca.SNPs.vcf.gz": dataset including SNPs genotypes for 255 individuals of Prunus armeniaca from Central Asia, filtered from Groppi et al. 2021 (https://www.nature.com/articles/s41467-021-24283-6). -"P.armeniaca Q-values.xl…
View article: Prunus armeniaca SNPs dataset
Prunus armeniaca SNPs dataset Open
-"armeniaca.SNPs.vcf.gz": dataset including SNPs genotypes for 255 individuals of Prunus armeniaca from Central Asia, filtered from Groppi et al. 2021 (https://www.nature.com/articles/s41467-021-24283-6). -"P.armeniaca Q-values.xl…
View article: Allele mining of eukaryotic translation initiation factor genes in<i>Prunus</i>species for the identification of new sources of resistance to sharka
Allele mining of eukaryotic translation initiation factor genes in<i>Prunus</i>species for the identification of new sources of resistance to sharka Open
Background Members of the eukaryotic translation initiation complex are co-opted in viral infection, leading to susceptibility in many crop species, including stone fruit trees ( Prunus spp) . Therefore, modification of one of those eukary…
View article: Pipeline to detect the positional and directional relationship between transposable elements and adjacent genes in host genome
Pipeline to detect the positional and directional relationship between transposable elements and adjacent genes in host genome Open
Understanding the relationship between transposable elements (TEs) and their closest positional genes in the host genome is a key point to explore their potential role in genome evolution. Transposable elements can regulate and affect gene…
View article: "Aramis®" strategy: a durable manner to develop a sharka resistant apricot cultivar
"Aramis®" strategy: a durable manner to develop a sharka resistant apricot cultivar Open
International audience
View article: Population genomics of apricots unravels domestication history and adaptive events
Population genomics of apricots unravels domestication history and adaptive events Open
View article: Genetic diversity and population structure analyses in the Alpine plum (Prunus brigantina Vill.) confirm its affiliation to the Armeniaca section
Genetic diversity and population structure analyses in the Alpine plum (Prunus brigantina Vill.) confirm its affiliation to the Armeniaca section Open
View article: Genetic diversity and population structure analyses in the Alpine plum (<i>Prunus brigantina</i>Vill.) confirm its affiliation to the Armeniaca section
Genetic diversity and population structure analyses in the Alpine plum (<i>Prunus brigantina</i>Vill.) confirm its affiliation to the Armeniaca section Open
In-depth characterization of the genetic diversity and population structure of wild relatives of crops is of paramount importance for genetic improvement and biodiversity conservation, and is particularly crucial when the wild relatives of…
View article: Distinctive Gene Expression Patterns Define Endodormancy to Ecodormancy Transition in Apricot and Peach
Distinctive Gene Expression Patterns Define Endodormancy to Ecodormancy Transition in Apricot and Peach Open
Dormancy is a physiological state that plants enter for winter hardiness. Environmental-induced dormancy onset and release in temperate perennials coordinate growth cessation and resumption, but how the entire process, especially chilling-…
View article: Silencing of one copy of the translation initiation factor eIFiso4G in Japanese plum (Prunus salicina) impacts susceptibility to Plum pox virus (PPV) and small RNA production
Silencing of one copy of the translation initiation factor eIFiso4G in Japanese plum (Prunus salicina) impacts susceptibility to Plum pox virus (PPV) and small RNA production Open
View article: A complex <i>eIF4E locus</i> impacts the durability of <i>va</i> resistance to <i>Potato virus Y</i> in tobacco
A complex <i>eIF4E locus</i> impacts the durability of <i>va</i> resistance to <i>Potato virus Y</i> in tobacco Open
Summary Many recessive resistances against potyviruses are mediated by eukaryotic translation initiation factor 4E (eIF4E). In tobacco, the va resistance gene commonly used to control Potato virus Y (PVY) corresponds to a large deletion af…
View article: Prunus genetics and applications after de novo genome sequencing: achievements and prospects
Prunus genetics and applications after de novo genome sequencing: achievements and prospects Open
Prior to the availability of whole-genome sequences, our understanding of the structural and functional aspects of Prunus tree genomes was limited mostly to molecular genetic mapping of important traits and development of EST resour…
View article: MOESM9 of Silencing of one copy of the translation initiation factor eIFiso4G in Japanese plum (Prunus salicina) impacts susceptibility to Plum pox virus (PPV) and small RNA production
MOESM9 of Silencing of one copy of the translation initiation factor eIFiso4G in Japanese plum (Prunus salicina) impacts susceptibility to Plum pox virus (PPV) and small RNA production Open
Additional file 9: Table S3. Differentially expressed miRNA species and their targets in wild-type ‘Angeleno’ and in PpeIFiso4G11-silenced transgenic line. 1 Treatment refers to the non-infected (NI) to infected, with either PPV-M or PPV-D…
View article: MOESM8 of Silencing of one copy of the translation initiation factor eIFiso4G in Japanese plum (Prunus salicina) impacts susceptibility to Plum pox virus (PPV) and small RNA production
MOESM8 of Silencing of one copy of the translation initiation factor eIFiso4G in Japanese plum (Prunus salicina) impacts susceptibility to Plum pox virus (PPV) and small RNA production Open
Additional file 8: Table S2. Stem-loop reverse transcription-polymerase chain reaction (RT-PCR) detection of selected siRNAs and miRNAs. * Number indicates the number of reads issued from NGS for each siRNA molecule as depicted in Fig. 3. …
View article: <i>NtTPN1</i>: a <i>RPP8</i>‐like <i>R</i> gene required for <i>Potato virus Y</i>‐induced veinal necrosis in tobacco
<i>NtTPN1</i>: a <i>RPP8</i>‐like <i>R</i> gene required for <i>Potato virus Y</i>‐induced veinal necrosis in tobacco Open
Summary Potato virus Y ( PVY ) is one of the most damaging viruses of tobacco. In particular, aggressive necrotic strains ( PVY N ) lead to considerable losses in yield. The main source of resistance against PVY is linked to the va locus. …
View article: Resistance to sharka in Stone Fruit trees : Genetic and genomic technologies for new breeding strategies
Resistance to sharka in Stone Fruit trees : Genetic and genomic technologies for new breeding strategies Open
Resistance to sharka in Stone Fruit trees : Genetic and genomic technologies for new breeding strategies. 9. International Rosaceae Genomics Conference
View article: Advocating a need for suitable breeding approaches to boost integrated pest management: a European perspective
Advocating a need for suitable breeding approaches to boost integrated pest management: a European perspective Open
Currently, European farmers do not have access to sufficient numbers and diversity of crop species/varieties. This prevents them from designing cropping systems more resilient to abiotic and biotic stresses. Crop diversification is a key l…
View article: A fast and efficient protocol for small RNA extraction in Japanese plum and other Prunus species
A fast and efficient protocol for small RNA extraction in Japanese plum and other Prunus species Open
View article: Fighting Sharka in Peach: Current Limitations and Future Perspectives
Fighting Sharka in Peach: Current Limitations and Future Perspectives Open
Sharka, caused by Plum Pox Virus (PPV), is by far the most important infectious disease of peach [P. persica (L.) Batsch] and other Prunus species. The progressive spread of the virus in many important growing areas throughout Europe poses…
View article: Genome‐wide association links candidate genes to resistance to <i>Plum Pox Virus</i> in apricot (<i>Prunus armeniaca</i>)
Genome‐wide association links candidate genes to resistance to <i>Plum Pox Virus</i> in apricot (<i>Prunus armeniaca</i>) Open
Summary In fruit tree species, many important traits have been characterized genetically by using single‐family descent mapping in progenies segregating for the traits. However, most mapped loci have not been sufficiently resolved to the i…
View article: Allelic variation at the rpv1 locus controls partial resistance to Plum pox virus infection in Arabidopsis thaliana
Allelic variation at the rpv1 locus controls partial resistance to Plum pox virus infection in Arabidopsis thaliana Open
These results indicate that rpv1 resistance to PPV carried by the Cvi-1 and Col-0 accessions is linked to allelic variations at the Arabidopsis cPGK2 locus, leading to incomplete, compatible interaction with the virus.