Devaki Bhaya
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View article: Horizontal Gene Transfer and Recombination in Cyanobacteriota
Horizontal Gene Transfer and Recombination in Cyanobacteriota Open
Cyanobacteria played a pivotal role in shaping Earth's early history and today are key players in many ecosystems. As versatile and ubiquitous phototrophs, they are used as models for oxygenic photosynthesis, nitrogen fixation, circadian r…
View article: Cyanobacteria and Chloroflexota cooperate to structure light-responsive biofilms
Cyanobacteria and Chloroflexota cooperate to structure light-responsive biofilms Open
Microbial mats are stratified communities often dominated by unicellular and filamentous phototrophs within an exopolymer matrix. It is challenging to quantify the dynamic responses of community members in situ as they experience steep gra…
View article: Abundant and active community members respond to diel cycles in hot spring phototrophic mats
Abundant and active community members respond to diel cycles in hot spring phototrophic mats Open
Photosynthetic microbial mats in hot springs can provide insights into the diel behaviors of communities in extreme environments. In this habitat, photosynthesis dominates during the day, leading to super-oxic conditions, with a rapid tran…
View article: Abundant and active community members respond to the diel cycle in hot spring phototrophic mats
Abundant and active community members respond to the diel cycle in hot spring phototrophic mats Open
Photosynthetic microbial mats in hot springs can provide insights into the diel behaviors of communities in extreme environments. In this habitat, photosynthesis dominates during the day, leading to super-oxic conditions, with a rapid tran…
View article: Illuminating microbial mat assembly: Cyanobacteria and Chloroflexota cooperate to structure light-responsive biofilms
Illuminating microbial mat assembly: Cyanobacteria and Chloroflexota cooperate to structure light-responsive biofilms Open
Microbial mats are stratified communities often dominated by unicellular and filamentous phototrophs within an exopolymer matrix. It is challenging to quantify the dynamic responses of community members in situ as they experience steep gra…
View article: Reference-free structural variant detection in microbiomes via long-read co-assembly graphs
Reference-free structural variant detection in microbiomes via long-read co-assembly graphs Open
Motivation: The study of bacterial genome dynamics is vital for understanding the mechanisms underlying microbial adaptation, growth, and their impact on host phenotype. Structural variants (SVs), genomic alterations of 50 base pairs or mo…
View article: Draft genome of <i>Chloroflexu</i> s sp. MS-CIW-1, of the <i>Chloroflexus</i> sp. MS-G group from Mushroom Spring, Yellowstone National Park
Draft genome of <i>Chloroflexu</i> s sp. MS-CIW-1, of the <i>Chloroflexus</i> sp. MS-G group from Mushroom Spring, Yellowstone National Park Open
Chloroflexus sp. MS-CIW-1 was isolated from a phototrophic mat in Mushroom Spring, an alkaline hot spring in Yellowstone National Park, WY, USA. We report the draft genome of 4.8 Mb consisting of 6 contigs with 3755 protein-coding genes an…
View article: Reference-free Structural Variant Detection in Microbiomes via Long-read Coassembly Graphs
Reference-free Structural Variant Detection in Microbiomes via Long-read Coassembly Graphs Open
Bacterial genome dynamics are vital for understanding the mechanisms underlying microbial adaptation, growth, and their broader impact on host phenotype. Structural variants (SVs), genomic alterations of 10 base pairs or more, play a pivot…
View article: Reviewer #1 (Public Review): Hybridization breaks species barriers in long-term coevolution of a cyanobacterial population
Reviewer #1 (Public Review): Hybridization breaks species barriers in long-term coevolution of a cyanobacterial population Open
Bacterial species often undergo rampant recombination yet maintain cohesive genomic identity. Ecological differences can generate recombination barriers between species and sustain genomic clusters in the short term. But can these forces p…
View article: Hybridization breaks species barriers in long-term coevolution of a cyanobacterial population
Hybridization breaks species barriers in long-term coevolution of a cyanobacterial population Open
Bacterial species often undergo rampant recombination yet maintain cohesive genomic identity. Ecological differences can generate recombination barriers between species and sustain genomic clusters in the short term. But can these forces p…
View article: Hybridization breaks species barriers in long-term coevolution of a cyanobacterial population
Hybridization breaks species barriers in long-term coevolution of a cyanobacterial population Open
Bacterial species often undergo rampant recombination yet maintain cohesive genomic identity. Ecological differences can generate recombination barriers between species and sustain genomic clusters in the short term. But can these forces p…
View article: Reviewer #2 (Public Review): Hybridization breaks species barriers in long-term coevolution of a cyanobacterial population
Reviewer #2 (Public Review): Hybridization breaks species barriers in long-term coevolution of a cyanobacterial population Open
Bacterial species often undergo rampant recombination yet maintain cohesive genomic identity. Ecological differences can generate recombination barriers between species and sustain genomic clusters in the short term. But can these forces p…
View article: Hybridization breaks species barriers in long-term coevolution of a cyanobacterial population
Hybridization breaks species barriers in long-term coevolution of a cyanobacterial population Open
Bacterial species often undergo rampant recombination yet maintain cohesive genomic identity. Ecological differences can generate recombination barriers between species and sustain genomic clusters in the short term. But can these forces p…