Zhi Deng
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View article: SPDEv3.0: A multidisciplinary integrated data analysis platform
SPDEv3.0: A multidisciplinary integrated data analysis platform Open
Plant research faces persistent challenges in integrating heterogeneous data and ensuring compatibility across diverse analytical pipelines. The limited automation of existing tools often results in fragmented workflows, reducing analytica…
View article: Instrumentation of JUNO 3-inch PMTs
Instrumentation of JUNO 3-inch PMTs Open
Over 25,600 3-inch photomultiplier tubes (PMTs) have been instrumented for the central detector of the Jiangmen Underground Neutrino Observatory. Each PMT is equipped with a high-voltage divider and a frontend cable with waterproof sealing…
The screened triterpene acids from Loquat fruit by CysLTR1-immobilized column could serve as alternative anti-inflammatory agents Open
Our results indicated that CysLTR1-immobilized column was a rapid and effective tool to seek out the target-specific components from herbal extract, and the screened triterpene acids could serve as alternative anti-inflammatory agents to L…
The haplotype-resolved telomere-to-telomere genome and OMICS analyses reveal genetic responses to tapping in rubber tree Open
Rubber tree (Hevea brasiliensis) is the primary source of natural rubber and economically important. We present the haplotype-resolved, telomere-to-telomere, gap-free genome assembly of the cultivar CATAS 7-33-97, with both haplotypes cont…
Valorization of tea (Camellia sinensis) waste: Extraction of bioactive compounds using ionic liquids and evaluation of their stability, efficiency, and volatile profiles during the process Open
This study explored 50 % 1-butyl-3-methylimidazolium chloride (BMIMCL) and 50 % 1-ethyl-3-methylimidazolium chloride (EMIMCL) as alternative solvents for extracting bioactives from tea waste (TW) of Camellia sinensis. As both release and d…
View article: Genome-Wide Identification and Expression Analysis of GASA Genes in Hevea brasiliensis Reveals Their Involvement in Response to Cold Stress
Genome-Wide Identification and Expression Analysis of GASA Genes in Hevea brasiliensis Reveals Their Involvement in Response to Cold Stress Open
The Gibberellic Acid Stimulated in Arabidopsis (GASA) gene family is regulated by gibberellins and plays a crucial role in regulating plant growth and development. Based on rubber tree genome data, 18 HbGASA genes, designated HbGASA1 to Hb…
View article: Genome-Wide Identification and Expression Analysis of GASA Genes in <em>Hevea brasiliensis</em> Reveals their Involvement in Response to Cold Stress
Genome-Wide Identification and Expression Analysis of GASA Genes in <em>Hevea brasiliensis</em> Reveals their Involvement in Response to Cold Stress Open
The Gibberellic Acid-Stimulated in Arabidopsis (GASA) gene family, a plant-specific transcription factor family, is regulated by gibberellins and plays a crucial role in regulating plant growth and development. To further explore the funct…
View article: Genome-Wide Identification and Expression Profile of Farnesyl Pyrophosphate Synthase (FPS) Gene Family in Euphorbia Hirta L.
Genome-Wide Identification and Expression Profile of Farnesyl Pyrophosphate Synthase (FPS) Gene Family in Euphorbia Hirta L. Open
The biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), which are essential for sesquiterpenes and triterpenes, respectively, is primarily governed by the mevalonate pathway, wherein farnesyl pyrophosphate …
Genome-Wide Identification and Characterization of bHLH Gene Family in Hevea brasiliensis Open
The basic helix-loop-helix (bHLH) transcription factors play crucial roles in plant growth, development, and stress responses. However, their identification and insights into the understanding of their role in rubber trees remain largely u…
Genome-Wide Identification and Characterization of bHLH Gene Family in <em>Hevea brasiliensis</em> Open
The basic helix loop helix (bHLH) transcription factors play crucial roles in plant growth, development, and stress responses. However, their identification and insight understanding in rubber trees remain largely uncovered. In this study,…
View article: The haplotype-resolved telomere-to-telomere genome and OMICS analyses reveal the genetic responses of tapping in rubber tree
The haplotype-resolved telomere-to-telomere genome and OMICS analyses reveal the genetic responses of tapping in rubber tree Open
Rubber tree (Hevea brasiliensis), as the primary source of natural rubber (NR), holds a significant economic significance. The high-quality genome has been long pursued to understand the rubber production process, genomic structure, and ge…
View article: JUNO Sensitivity to Invisible Decay Modes of Neutrons
JUNO Sensitivity to Invisible Decay Modes of Neutrons Open
We explore the decay of bound neutrons into invisible particles (e.g., $n\rightarrow 3 ν$ or $nn \rightarrow 2 ν$) in the JUNO liquid scintillator detector, which do not produce an observable signal. The invisible decay includes two decay …
View article: Multi-scale hash encoding based neural geometry representation
Multi-scale hash encoding based neural geometry representation Open
Recently, neural implicit function-based representation has attracted more and more attention, and has been widely used to represent surfaces using differentiable neural networks. However, surface reconstruction from point clouds or multi-…
View article: Identifying canonical and replicable multi‐scale intrinsic connectivity networks in 100k+ <scp>resting‐state fMRI</scp> datasets
Identifying canonical and replicable multi‐scale intrinsic connectivity networks in 100k+ <span>resting‐state fMRI</span> datasets Open
Despite the known benefits of data‐driven approaches, the lack of approaches for identifying functional neuroimaging patterns that capture both individual variations and inter‐subject correspondence limits the clinical utility of rsfMRI an…
View article: JUNO sensitivity to <sup>7</sup>Be, pep, and CNO solar neutrinos
JUNO sensitivity to <sup>7</sup>Be, pep, and CNO solar neutrinos Open
The Jiangmen Underground Neutrino Observatory (JUNO), the first multi-kton liquid scintillator detector, which is under construction in China, will have a unique potential to perform a real-time measurement of solar neutrinos well below th…
Label-free timing analysis of SiPM-based modularized detectors with physics-constrained deep learning Open
Pulse timing is an important topic in nuclear instrumentation, with far-reaching applications from high energy physics to radiation imaging. While high-speed analog-to-digital converters become more and more developed and accessible, their…
Label-free timing analysis of SiPM-based modularized detectors with physics-constrained deep learning Open
Pulse timing is an important topic in nuclear instrumentation, with far-reaching applications from high energy physics to radiation imaging. While high-speed analog-to-digital converters become more and more developed and accessible, their…
View article: JUNO sensitivity to $^7$Be, $pep$, and CNO solar neutrinos
JUNO sensitivity to $^7$Be, $pep$, and CNO solar neutrinos Open
The Jiangmen Underground Neutrino Observatory (JUNO), the first multi-kton liquid scintillator detector, which is under construction in China, will have a unique potential to perform a real-time measurement of solar neutrinos well below th…
View article: Chromosome‐level wild <i>Hevea brasiliensis</i> genome provides new tools for genomic‐assisted breeding and valuable loci to elevate rubber yield
Chromosome‐level wild <i>Hevea brasiliensis</i> genome provides new tools for genomic‐assisted breeding and valuable loci to elevate rubber yield Open
Summary The rubber tree ( Hevea brasiliensis ) is grown in tropical regions and is the major source of natural rubber. Using traditional breeding approaches, the latex yield has increased by sixfold in the last century. However, the underl…
PulseDL-II: A System-on-Chip Neural Network Accelerator for Timing and Energy Extraction of Nuclear Detector Signals Open
Front-end electronics equipped with high-speed digitizers are being used and proposed for future nuclear detectors. Recent literature reveals that deep learning models, especially one-dimensional convolutional neural networks, are promisin…
TRAF3IP3 Is Cleaved by EV71 3C Protease and Exhibits Antiviral Activity Open
Enterovirus 71 (EV71) is one of the major pathogens of hand, foot, and mouth disease, which poses a major risk to public health and infant safety. 3C protease (3C pro ), a non-structural protein of EV71, promotes viral protein maturation b…
Sketch2PQ: Freeform Planar Quadrilateral Mesh Design via a Single Sketch Open
The freeform architectural modeling process often involves two important stages: concept design and digital modeling. In the first stage, architects usually sketch the overall 3D shape and the panel layout on a physical or digital paper br…
View article: Sketch2PQ: Freeform Planar Quadrilateral Mesh Design via a Single Sketch
Sketch2PQ: Freeform Planar Quadrilateral Mesh Design via a Single Sketch Open
The freeform architectural modeling process often involves two important stages: concept design and digital modeling. In the first stage, architects usually sketch the overall 3D shape and the panel layout on a physical or digital paper br…
View article: JUNO Sensitivity on Proton Decay $p\to \bar\nu K^+$ Searches
JUNO Sensitivity on Proton Decay $p\to \bar\nu K^+$ Searches Open
The Jiangmen Underground Neutrino Observatory (JUNO) is a large liquid scintillator detector designed to explore many topics in fundamental physics. In this paper, the potential on searching for proton decay in $p\to \barνK^+$ mode with JU…
View article: Genome-Wide Identification and Analysis of Small Nucleolar RNAs and Their Roles in Regulating Latex Regeneration in the Rubber Tree (Hevea brasiliensis)
Genome-Wide Identification and Analysis of Small Nucleolar RNAs and Their Roles in Regulating Latex Regeneration in the Rubber Tree (Hevea brasiliensis) Open
Small nucleolar RNAs (snoRNAs) are a class of conserved nuclear RNAs that play important roles in the modification of ribosomal RNAs (rRNAs) in plants. In rubber trees, rRNAs are run off with latex flow during tapping and need to be regene…