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View article: Domestication of Tartary Buckwheat Shaped a Regulatory Module for Seedling Salt Tolerance by Targeting the Magnesium Transporter Gene <i>FtMGT2</i>
Domestication of Tartary Buckwheat Shaped a Regulatory Module for Seedling Salt Tolerance by Targeting the Magnesium Transporter Gene <i>FtMGT2</i> Open
Globally, soil salinization increasingly affects farmland, severely limiting the production of Tartary buckwheat ( Fagopyrum tataricum ). To identify genetic factors for salt tolerance, we analyzed core Tartary buckwheat accessions and uti…
View article: Genome‐Wide Association Studies Reveal the Genetic Architecture of Ionomic Variation in Grains of Tartary Buckwheat
Genome‐Wide Association Studies Reveal the Genetic Architecture of Ionomic Variation in Grains of Tartary Buckwheat Open
Tartary buckwheat ( Fagopyrum tataricum ) is esteemed as a medicinal crop due to its high nutritional and health value. However, the genetic basis for the variations in Tartary buckwheat grain ionome remains inadequately understood. Throug…
View article: Genome-wide identification, evolution, and expression level analysis of the TALE gene family in Sorghum bicolor
Genome-wide identification, evolution, and expression level analysis of the TALE gene family in Sorghum bicolor Open
This study lays a theoretical foundation for the study of the biological function and mechanism of SbTALE genes and is of great significance for the mining of resistance genes and trait improvement.
View article: Evolution and Domestication of a Novel Biosynthetic Gene Cluster Contributing to the Flavonoid Metabolism and High‐Altitude Adaptability of Plants in the <i>Fagopyrum</i> Genus
Evolution and Domestication of a Novel Biosynthetic Gene Cluster Contributing to the Flavonoid Metabolism and High‐Altitude Adaptability of Plants in the <i>Fagopyrum</i> Genus Open
The diversity of secondary metabolites is an important means for plants to cope with the complex and ever‐changing terrestrial environment. Plant biosynthetic gene clusters (BGCs) are crucial for the biosynthesis of secondary metabolites. …
View article: Multi‐omics identification of a key glycosyl hydrolase gene <i>FtGH1</i> involved in rutin hydrolysis in Tartary buckwheat (<i>Fagopyrum tataricum</i>)
Multi‐omics identification of a key glycosyl hydrolase gene <i>FtGH1</i> involved in rutin hydrolysis in Tartary buckwheat (<i>Fagopyrum tataricum</i>) Open
Summary Rutin, a flavonoid rich in buckwheat, is important for human health and plant resistance to external stresses. The hydrolysis of rutin to quercetin underlies the bitter taste of Tartary buckwheat. In order to identify rutin hydroly…
View article: Genome-wide identification, evolution and expression pattern analysis of the GATA gene family in Sorghum bicolor
Genome-wide identification, evolution and expression pattern analysis of the GATA gene family in Sorghum bicolor Open
The GATA family of transcription factors is zinc finger DNA binding proteins involved in a variety of biological processes, including plant growth and development and response to biotic/abiotic stresses, and thus play an essential role in …
View article: Genome-Wide Identification, Evolution, and Expression Pattern Analysis of the GATA Gene Family in Tartary Buckwheat (Fagopyrum tataricum)
Genome-Wide Identification, Evolution, and Expression Pattern Analysis of the GATA Gene Family in Tartary Buckwheat (Fagopyrum tataricum) Open
GATA is a transcription factor that exerts a vital function in plant growth and development, physiological metabolism, and environmental responses. However, the GATA gene family has rarely been studied in Tartary buckwheat since the comple…
View article: Genome‑wide identification, phylogenetic and expression pattern analysis of GATA family genes in foxtail millet (Setaria italica)
Genome‑wide identification, phylogenetic and expression pattern analysis of GATA family genes in foxtail millet (Setaria italica) Open
Background Transcription factors (TFs) play important roles in plants. Among the major TFs, GATA plays a crucial role in plant development, growth, and stress responses. However, there have been few studies on the GATA gene family in foxta…
View article: Genome-wide identification, phylogenetic and expression pattern analysis of MADS-box family genes in foxtail millet (Setaria italica)
Genome-wide identification, phylogenetic and expression pattern analysis of MADS-box family genes in foxtail millet (Setaria italica) Open
Foxtail millet ( Setaria italica ) is rich in nutrients and extremely beneficial to human health. We identified and comprehensively analyzed 89 MADS-box genes in the foxtail millet genome. According to the classification of MADS-box genes …
View article: Additional file 4 of Genome-wide identification and characterization of the SPL gene family and its expression in the various developmental stages and stress conditions in foxtail millet (Setaria italica)
Additional file 4 of Genome-wide identification and characterization of the SPL gene family and its expression in the various developmental stages and stress conditions in foxtail millet (Setaria italica) Open
Additional file 4: Table S4. Information about mir156/172 and SiSPLgene binding sites.
View article: Additional file 6 of Genome-wide identification and characterization of the SPL gene family and its expression in the various developmental stages and stress conditions in foxtail millet (Setaria italica)
Additional file 6 of Genome-wide identification and characterization of the SPL gene family and its expression in the various developmental stages and stress conditions in foxtail millet (Setaria italica) Open
Additional file 6: Table S6. Ka/Ks values of each subfamily genepair and all fragment repeat sequence gene pairs.
View article: Additional file 1 of Genome-wide identification and characterization of the SPL gene family and its expression in the various developmental stages and stress conditions in foxtail millet (Setaria italica)
Additional file 1 of Genome-wide identification and characterization of the SPL gene family and its expression in the various developmental stages and stress conditions in foxtail millet (Setaria italica) Open
Additional file 1: Table S1. List of the 18 Setaria italicaSPL genes identified in this study.
View article: Additional file 9 of Genome-wide identification and characterization of the SPL gene family and its expression in the various developmental stages and stress conditions in foxtail millet (Setaria italica)
Additional file 9 of Genome-wide identification and characterization of the SPL gene family and its expression in the various developmental stages and stress conditions in foxtail millet (Setaria italica) Open
Additional file 9: Table S9. Primer sequences for qRT-PCR.
View article: Additional file 3 of Genome-wide identification and characterization of the SPL gene family and its expression in the various developmental stages and stress conditions in foxtail millet (Setaria italica)
Additional file 3 of Genome-wide identification and characterization of the SPL gene family and its expression in the various developmental stages and stress conditions in foxtail millet (Setaria italica) Open
Additional file 3: Table S3. SiSPL gene promoter regioncis-acting element details.
View article: Additional file 2 of Genome-wide identification and characterization of the SPL gene family and its expression in the various developmental stages and stress conditions in foxtail millet (Setaria italica)
Additional file 2 of Genome-wide identification and characterization of the SPL gene family and its expression in the various developmental stages and stress conditions in foxtail millet (Setaria italica) Open
Additional file 2: Table S2. Analysis and distribution of theconserved motifs in SPL proteins of Setaria italica and other species.
View article: Additional file 8 of Genome-wide identification and characterization of the SPL gene family and its expression in the various developmental stages and stress conditions in foxtail millet (Setaria italica)
Additional file 8 of Genome-wide identification and characterization of the SPL gene family and its expression in the various developmental stages and stress conditions in foxtail millet (Setaria italica) Open
Additional file 8: Table S8. SPL protein sequence information forthe species other than Setaria italica in the phylogenetic treeanalysis.
View article: Additional file 7 of Genome-wide identification and characterization of the SPL gene family and its expression in the various developmental stages and stress conditions in foxtail millet (Setaria italica)
Additional file 7 of Genome-wide identification and characterization of the SPL gene family and its expression in the various developmental stages and stress conditions in foxtail millet (Setaria italica) Open
Additional file 7: Table S7. One-to-one orthologous generelationships between Setaria italica and other plants.
View article: Additional file 5 of Genome-wide identification and characterization of the SPL gene family and its expression in the various developmental stages and stress conditions in foxtail millet (Setaria italica)
Additional file 5 of Genome-wide identification and characterization of the SPL gene family and its expression in the various developmental stages and stress conditions in foxtail millet (Setaria italica) Open
Additional file 5: Table S5. Segmental duplications of Setariaitalica SPL genes.
View article: Genome-wide investigation of the GRAS transcription factor family in foxtail millet (Setaria italica L.)
Genome-wide investigation of the GRAS transcription factor family in foxtail millet (Setaria italica L.) Open
Background GRAS transcription factors perform indispensable functions in various biological processes, such as plant growth, fruit development, and biotic and abiotic stress responses. The development of whole-genome sequencing has allowed…
View article: Genome-Wide Identification and Characterization of The MADS-Box Gene Family and Its Expression in The Various Developmental Stage and Stress Conditions in Foxtail Millet (Setaria Italica)
Genome-Wide Identification and Characterization of The MADS-Box Gene Family and Its Expression in The Various Developmental Stage and Stress Conditions in Foxtail Millet (Setaria Italica) Open
Foxtail millet ( Setaria italica ) is rich in nutrients and extremely beneficial to human health. We identified and comprehensively analyzed 89 MADS-box genes in the foxtail millet genome. According to the classification of MADS-box genes …