Dipayan Gupta
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View article: BioSamples database: the global hub for sample metadata and multi-omics integration
BioSamples database: the global hub for sample metadata and multi-omics integration Open
The BioSamples database (https://www.ebi.ac.uk/biosamples/) at the European Bioinformatics Institute (EMBL-EBI) is a core infrastructure resource that provides a centralized platform for the storage, curation, and dissemination of biologic…
View article: MorPhiC Consortium: towards functional characterization of all human genes
MorPhiC Consortium: towards functional characterization of all human genes Open
View article: HoloFood Data Portal: holo-omic datasets for analysing host–microbiota interactions in animal production
HoloFood Data Portal: holo-omic datasets for analysing host–microbiota interactions in animal production Open
The HoloFood project used a hologenomic approach to understand the impact of host–microbiota interactions on salmon and chicken production by analysing multiomic data, phenotypic characteristics, and associated metadata in response to nove…
View article: The European Nucleotide Archive in 2024
The European Nucleotide Archive in 2024 Open
The European Nucleotide Archive (ENA, https://www.ebi.ac.uk/ena), maintained at the European Molecular Biology Laboratory's European Bioinformatics Institute (EMBL-EBI) provides freely accessible services, both for deposition of, and acces…
View article: Mobilisation and analyses of publicly available SARS-CoV-2 data for pandemic responses
Mobilisation and analyses of publicly available SARS-CoV-2 data for pandemic responses Open
The COVID-19 pandemic has seen large-scale pathogen genomic sequencing efforts, becoming part of the toolbox for surveillance and epidemic research. This resulted in an unprecedented level of data sharing to open repositories, which has ac…
View article: The European Nucleotide Archive in 2023
The European Nucleotide Archive in 2023 Open
The European Nucleotide Archive (ENA; https://www.ebi.ac.uk/ena) is maintained by the European Molecular Biology Laboratory's European Bioinformatics Institute (EMBL-EBI). The ENA is one of the three members of the International Nucleotide…
View article: Mobilisation and analyses of publicly available SARS-CoV-2 data for pandemic responses
Mobilisation and analyses of publicly available SARS-CoV-2 data for pandemic responses Open
The COVID-19 pandemic has seen large-scale pathogen genomic sequencing efforts, becoming part of the toolbox for surveillance and epidemic research. This resulted in an unprecedented level of data sharing to open repositories, which has ac…
View article: Streamlining data brokering from Research Data Management platforms to ELIXIR Repositories
Streamlining data brokering from Research Data Management platforms to ELIXIR Repositories Open
Mobilizing data from data producers to data deposition databases is an integral service that research data management (RDM) platforms could offer. However, brokering the heterogeneous mixture of scientific data requires systems that are co…
View article: A multi-omics data brokering approach from dataHub to ELIXIR deposition databases
A multi-omics data brokering approach from dataHub to ELIXIR deposition databases Open
View article: The European Nucleotide Archive in 2022
The European Nucleotide Archive in 2022 Open
The European Nucleotide Archive (ENA; https://www.ebi.ac.uk/ena), maintained by the European Molecular Biology Laboratory's European Bioinformatics Institute (EMBL-EBI), offers those producing data an open and supported platform for the ma…
View article: GA4GH: International policies and standards for data sharing across genomic research and healthcare
GA4GH: International policies and standards for data sharing across genomic research and healthcare Open
View article: The European Nucleotide Archive in 2021
The European Nucleotide Archive in 2021 Open
The European Nucleotide Archive (ENA, https://www.ebi.ac.uk/ena), maintained at the European Molecular Biology Laboratory's European Bioinformatics Institute (EMBL-EBI) provides freely accessible services, both for deposition of, and acces…
View article: BioSamples database: FAIRer samples metadata to accelerate research data management
BioSamples database: FAIRer samples metadata to accelerate research data management Open
The BioSamples database at EMBL-EBI is the central institutional repository for sample metadata storage and connection to EMBL-EBI archives and other resources. The technical improvements to our infrastructure described in our last update …
View article: The European Nucleotide Archive in 2020
The European Nucleotide Archive in 2020 Open
The European Nucleotide Archive (ENA; https://www.ebi.ac.uk/ena), provided by the European Molecular Biology Laboratory's European Bioinformatics Institute (EMBL-EBI), has for almost forty years continued in its mission to freely archive a…