Dockyu Kim
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View article: Characterization of a Potato Soft Rot Pseudomonas Strain and Its Potential Threat to Greenland Farmlands
Characterization of a Potato Soft Rot Pseudomonas Strain and Its Potential Threat to Greenland Farmlands Open
Rapid global warming is causing Arctic permafrost to melt, expanding arable land and potentially exposing dormant soilborne plant pathogens to crops. However, research on bacterial plant pathogens emerging from these newly available farmla…
View article: Refining the genome of alkylbenzene-degrading <i>Rhodococcus</i> sp. DK17 and comparative analysis with genomes of its deletion mutants
Refining the genome of alkylbenzene-degrading <i>Rhodococcus</i> sp. DK17 and comparative analysis with genomes of its deletion mutants Open
Rhodococcus sp. strain DK17 degrades various alkylbenzenes, including o -xylene, making it a potential biocatalyst for the production of fine chemicals. DK17 carries the degradative genes on linear mega-plasmids. Here, we present the refin…
View article: Potential risks of bacterial plant pathogens from thawing permafrost in the Alaskan tundra
Potential risks of bacterial plant pathogens from thawing permafrost in the Alaskan tundra Open
Global warming-induced permafrost thawing raises concerns about the release of dormant microbes, including potentially harmful plant pathogens. However, the potential pathogenic risks associated with the thawing of permafrost remain poorly…
View article: Kraft Lignin Decomposition by Forest Soil Bacterium <i>Pseudomonas kribbensis</i> CHA-19
Kraft Lignin Decomposition by Forest Soil Bacterium <i>Pseudomonas kribbensis</i> CHA-19 Open
Identification of the biochemical metabolic pathway for lignin decomposition and the responsible degradative enzymes is needed for the effective biotechnological valorization of lignin to renewable chemical products. In this study, we inve…
View article: Potato Soft Rot Caused by Psychrotolerant Pseudomonas sp. from Subarctic Tundra Soil
Potato Soft Rot Caused by Psychrotolerant Pseudomonas sp. from Subarctic Tundra Soil Open
Agricultural activities and the number of farms in the subarctic regions have been increasing annually after the coronavirus disease 2019 pandemic to achieve food self-sufficiency. Potatoes are vulnerable to soft rot bacteria at all stages…
View article: Fungal Biodegradation of Poly(Butylene Adipate-Co-Terephthalate)-Polylactic Acid-Thermoplastic Starch Based Commercial Bio-Plastic Film at Ambient Conditions
Fungal Biodegradation of Poly(Butylene Adipate-Co-Terephthalate)-Polylactic Acid-Thermoplastic Starch Based Commercial Bio-Plastic Film at Ambient Conditions Open
View article: Biodegradation of Poly(Butylene Adipate-Co-Terephthalate)-Polylactic Acid-Thermoplastic Starch Based Commercial Bio-Plastic Film Using Newly Isolated Fungal Strains at Ambient Conditions
Biodegradation of Poly(Butylene Adipate-Co-Terephthalate)-Polylactic Acid-Thermoplastic Starch Based Commercial Bio-Plastic Film Using Newly Isolated Fungal Strains at Ambient Conditions Open
View article: Flavobacterium petrolei sp. nov., a novel psychrophilic, diesel-degrading bacterium isolated from oil-contaminated Arctic soil
Flavobacterium petrolei sp. nov., a novel psychrophilic, diesel-degrading bacterium isolated from oil-contaminated Arctic soil Open
This study presents taxonomic description of two novel diesel-degrading, psychrophilic strains: Kopri-42 T and Kopri-43, isolated during screening of oil-degrading psychrotrophs from oil-contaminated Arctic soil. A preliminary 16S rRNA gen…
View article: Crystal structure of a cold-active protease (Pro21717) from the psychrophilic bacterium, Pseudoalteromonas arctica PAMC 21717, at 1.4 Å resolution: Structural adaptations to cold and functional analysis of a laundry detergent enzyme
Crystal structure of a cold-active protease (Pro21717) from the psychrophilic bacterium, Pseudoalteromonas arctica PAMC 21717, at 1.4 Å resolution: Structural adaptations to cold and functional analysis of a laundry detergent enzyme Open
Enzymes isolated from organisms found in cold habitats generally exhibit higher catalytic activity at low temperatures than their mesophilic homologs and are therefore known as cold-active enzymes. Cold-active proteases are very useful in …
View article: Salicylate degradation by a cold-adapted Pseudomonas sp.
Salicylate degradation by a cold-adapted Pseudomonas sp. Open
Pseudomonas sp. strain MC1 was characterized as a cold-adapted, naphthalene-degrading bacterium that is able to grow in a broad temperature range of 5–30°C. MC1 harbors a catabolic plasmid, designated pYIC1, which is almost identical to th…
View article: Construction of Pseudoalteromonas - Escherichia coli shuttle vector based on a small plasmid from the marine organism Pseudoalteromonas
Construction of Pseudoalteromonas - Escherichia coli shuttle vector based on a small plasmid from the marine organism Pseudoalteromonas Open
남극 해양세균 Pseudoalteromonas sp. PAMC 21150에서 분리한 소형 플라스미드(small plasmid, pDK4)의 크기는 3,480bp이고 G+C 함량은 41.64%이며, 3개의 open reading frames(ORFs)을 포함하고 있다. 3개의 ORF는 replication initiation protein (RepA), conjugative mobilization protein (Mob), 그…