Donat Wulf
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View article: Many transcription factor families have evolutionarily conserved binding motifs in plants
Many transcription factor families have evolutionarily conserved binding motifs in plants Open
Transcription factors control gene expression during development and in response to a broad range of internal and external stimuli. They regulate promoter activity by directly binding cis-regulatory elements in DNA. The angiosperm Arabidop…
View article: Many transcription factor families have evolutionarily conserved binding motifs in plants
Many transcription factor families have evolutionarily conserved binding motifs in plants Open
Transcription factors control gene expression during development and in response to a broad range of internal and external stimuli. They regulate promoter activity by directly binding cis - regulatory elements in DNA. The angiosperm Arabid…
View article: Comparative analysis of gene regulatory networks identifies conserved regulators in seed plants
Comparative analysis of gene regulatory networks identifies conserved regulators in seed plants Open
Gene regulatory networks (GRNs) based on transcription factors (TFs) control development and environmental responses. In this study, GRNs were inferred computationally using random forest decision tree-based regression. Networks were const…
View article: Comparative analysis of gene regulatory networks identifies conserved regulators in seed plants
Comparative analysis of gene regulatory networks identifies conserved regulators in seed plants Open
Gene regulatory networks based on transcription factors control development and environmental responses in plants. Networks calculated by the machine learning algorithm random forest decision tree-based regression for the grasses barley, m…
View article: Multiple transcription factors mediate acclimation of Chlamydomonas to light stress
Multiple transcription factors mediate acclimation of Chlamydomonas to light stress Open
Light as a substrate for photosynthesis may be a boon or a bane. To thrive, photosynthetic organisms must constantly respond to changing light and CO2 conditions by balancing energy harvest and consumption in a highly dynamic way. Two majo…
View article: Transcription factors operate on a limited vocabulary of binding motifs in<i>Arabidopsis thaliana</i>
Transcription factors operate on a limited vocabulary of binding motifs in<i>Arabidopsis thaliana</i> Open
Predicting gene expression from promoter sequence requires understanding of the different signal integration points within a promoter. Sequence-specific transcription factors (TFs) binding to their cognate TF binding motifs control gene ex…
View article: Transcription factors mediating regulation of photosynthesis
Transcription factors mediating regulation of photosynthesis Open
Photosynthesis by which plants convert carbon dioxide to sugars using the energy of light is fundamental to life as it forms the basis of nearly all food chains. Surprisingly, our knowledge about its transcriptional regulation remains inco…
View article: Whole-Genome Sequence of Pseudomonas sp. Strain MM211, Isolated from Soil in Langenfeld, Germany
Whole-Genome Sequence of Pseudomonas sp. Strain MM211, Isolated from Soil in Langenfeld, Germany Open
Here, we present the genome sequence of Pseudomonas sp. strain MM211, which was isolated from garden soil. The complete circular genome consists of a 5,281,862-bp chromosome, with a GC content of 61.5%.
View article: Complete Genome Sequence of Pseudomonas sp. Strain MM213, an Isolate from a Brookside in Bielefeld, Germany
Complete Genome Sequence of Pseudomonas sp. Strain MM213, an Isolate from a Brookside in Bielefeld, Germany Open
Here, we report the complete genome sequence of Pseudomonas sp. strain MM213 of the Pseudomonas mandelii group, which was isolated from a brookside in Bielefeld, Germany. The genome size is 6,746,355 bp, with a GC content of 59.4% and 6,14…
View article: Local DNA shape is a general principle of transcription factor binding specificity in Arabidopsis thaliana
Local DNA shape is a general principle of transcription factor binding specificity in Arabidopsis thaliana Open
View article: Local DNA shape is a general principle of transcription factor binding specificity in<i>Arabidopsis thaliana</i>
Local DNA shape is a general principle of transcription factor binding specificity in<i>Arabidopsis thaliana</i> Open
A genome encodes two types of information, the “what can be made” and the “when and where”. The “what” are mostly proteins which perform the majority of functions within living organisms and the “when and where” is the regulatory informati…
View article: Ubiquitin ligase component LRS1 and transcription factor CrHy5 act as a light switch for photoprotection in<i>Chlamydomonas</i>
Ubiquitin ligase component LRS1 and transcription factor CrHy5 act as a light switch for photoprotection in<i>Chlamydomonas</i> Open
Survival under excess light conditions requires the light-induced accumulation of protein LHCSR3 and other photoprotection factors, to enable efficient energy-dependent quenching in the green microalga Chlamydomonas reinhardtii . Here, we …