Dongli He
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View article: Development and validation of an AI foundation model for endoscopic diagnosis of esophagogastric junction adenocarcinoma: a cohort and deep learning study
Development and validation of an AI foundation model for endoscopic diagnosis of esophagogastric junction adenocarcinoma: a cohort and deep learning study Open
This study was supported by the Shanghai Health Development Commission, Shanghai Science and Technology Commission, Tongji University, and Shanghai Municipal Commission of Economy and Informatization.
View article: Causal relationships between skin microbiome and pathological scars: a bidirectional mendelian randomization study
Causal relationships between skin microbiome and pathological scars: a bidirectional mendelian randomization study Open
Skin bacteria infection could be a potential risk factor on wound scar formation, yet the specifics of this relationship are not fully understood. This research investigates the causal relationships between specific skin microbiome and the…
View article: Genome-wide analysis of the laccase gene family in Arachis hypogaea and functional characterization of AhLAC63 involved in lignin biosynthesis and abiotic stress
Genome-wide analysis of the laccase gene family in Arachis hypogaea and functional characterization of AhLAC63 involved in lignin biosynthesis and abiotic stress Open
Plant laccases (LACs) play a vital role in lignification and participate in multiple biotic/abiotic stress responses. However, little is known about their role in lignin deposition and stress resistance in cultivated peanut (Arachis hypoga…
View article: Characterization of the CMS genetic regulation through comparative complete mitochondrial genome sequencing in <i>Nicotiana tabacum</i>
Characterization of the CMS genetic regulation through comparative complete mitochondrial genome sequencing in <i>Nicotiana tabacum</i> Open
Mitochondrial genomes (mitogenomes) of flowering plants vary greatly in structure and size, which can lead to frequent gene mutation, rearrangement, or recombination, then result in the cytoplasmic male sterile (CMS) mutants. In tobacco ( …
View article: Genome-wide analysis of UDP-glycosyltransferase gene family and identification of a flavonoid 7-O-UGT (AhUGT75) enhancing abiotic stress in peanut (Arachis hypogaea L.)
Genome-wide analysis of UDP-glycosyltransferase gene family and identification of a flavonoid 7-O-UGT (AhUGT75) enhancing abiotic stress in peanut (Arachis hypogaea L.) Open
Background Glycosylation, catalyzed by UDP-glycosyltransferase (UGT), was important for enhancing solubility, bioactivities, and diversity of flavonoids. Peanut ( Arachis hypogaea L.) is an important oilseed and cash crop worldwide. In add…
View article: Metabolomics combined with transcriptomics analyses of mechanism regulating testa pigmentation in peanut
Metabolomics combined with transcriptomics analyses of mechanism regulating testa pigmentation in peanut Open
Peanut testa (seed coat) contains large amounts of flavonoids that significantly influence seed color, taste, and nutritional qualities. There are various colors of peanut testa, however, their precise flavonoid components and regulatory m…
View article: Advances on Post-translational Modifications Involved in Seed Germination
Advances on Post-translational Modifications Involved in Seed Germination Open
Seed germination and subsequent seedling establishment are important developmental processes that undergo extremely complex changes of physiological status and are precisely regulated at transcriptional and translational levels. Phytohormo…
View article: Advances on Plant Ubiquitylome—From Mechanism to Application
Advances on Plant Ubiquitylome—From Mechanism to Application Open
Post-translational modifications (PTMs) of proteins enable modulation of their structure, function, localization and turnover. To date, over 660 PTMs have been reported, among which, reversible PTMs are regarded as the key players in cellu…
View article: Integrated Omics Analyses Identify Key Pathways Involved in Petiole Rigidity Formation in Sacred Lotus
Integrated Omics Analyses Identify Key Pathways Involved in Petiole Rigidity Formation in Sacred Lotus Open
Sacred lotus (Nelumbo nucifera Gaertn.) is a relic aquatic plant with two types of leaves, which have distinct rigidity of petioles. Here we assess the difference from anatomic structure to the expression of genes and proteins in two petio…
View article: Mutations on ent-kaurene oxidase 1 encoding gene attenuate its enzyme activity of catalyzing the reaction from ent-kaurene to ent-kaurenoic acid and lead to delayed germination in rice
Mutations on ent-kaurene oxidase 1 encoding gene attenuate its enzyme activity of catalyzing the reaction from ent-kaurene to ent-kaurenoic acid and lead to delayed germination in rice Open
Rice seed germination is a critical step that determines its entire life circle, with seeds failing to germinate or pre-harvest sprouting both reduce grain yield. Nevertheless, the mechanisms underlying this complex biological event remain…
View article: The Rice Alpha-Amylase, Conserved Regulator of Seed Maturation and Germination
The Rice Alpha-Amylase, Conserved Regulator of Seed Maturation and Germination Open
Alpha-amylase, the major form of amylase with secondary carbohydrate binding sites, is a crucial enzyme throughout the growth period and life cycle of angiosperm. In rice, alpha-amylase isozymes are critical for the formation of the storag…
View article: Additional file 4: of Proteomic analysis reveals response of differential wheat (Triticum aestivum L.) genotypes to oxygen deficiency stress
Additional file 4: of Proteomic analysis reveals response of differential wheat (Triticum aestivum L.) genotypes to oxygen deficiency stress Open
Table S2. Clustering of the DEPs using K-mean method (XLS 593 kb)
View article: Additional file 5: of Proteomic analysis reveals response of differential wheat (Triticum aestivum L.) genotypes to oxygen deficiency stress
Additional file 5: of Proteomic analysis reveals response of differential wheat (Triticum aestivum L.) genotypes to oxygen deficiency stress Open
Table S3. All identified proteins in this study (XLS 8212 kb)
View article: Additional file 3: of Proteomic analysis reveals response of differential wheat (Triticum aestivum L.) genotypes to oxygen deficiency stress
Additional file 3: of Proteomic analysis reveals response of differential wheat (Triticum aestivum L.) genotypes to oxygen deficiency stress Open
Table S1. The differentially expressed proteins (DEPs) (XLS 2273 kb)
View article: An Integrated “Multi-Omics” Comparison of Embryo and Endosperm Tissue-Specific Features and Their Impact on Rice Seed Quality
An Integrated “Multi-Omics” Comparison of Embryo and Endosperm Tissue-Specific Features and Their Impact on Rice Seed Quality Open
Although rice is a key crop species, few studies have addressed both rice seed physiological and nutritional quality, especially at the tissue level. In this study, an exhaustive "multi-omics" dataset on the mature rice seed was obtained b…
View article: Differential Molecular Responses of Rapeseed Cotyledons to Light and Dark Reveal Metabolic Adaptations toward Autotrophy Establishment
Differential Molecular Responses of Rapeseed Cotyledons to Light and Dark Reveal Metabolic Adaptations toward Autotrophy Establishment Open
Photosynthesis competent autotrophy is established during the postgerminative stage of plant growth. Among the multiple factors, light plays a decisive role in the switch from heterotrophic to autotrophic growth. Under dark conditions, the…