Doreen Babin
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View article: Soil type and Wastewater contaminants drive Antibiotic Resistance Genes, Mobile Genetic Elements, and Bacterial Communities in soil, cilantro rhizosphere, and phyllosphere
Soil type and Wastewater contaminants drive Antibiotic Resistance Genes, Mobile Genetic Elements, and Bacterial Communities in soil, cilantro rhizosphere, and phyllosphere Open
Background : In a previous study evaluating the effects of changing wastewater (WW) irrigation regime on the selection and spread of antibiotic resistance in Mezquital Valley soils—an area with long-term untreated wastewater (UWW) irrigati…
View article: Novel insights into the genome organization of Rhizobiaceae: identification of linear plasmids
Novel insights into the genome organization of Rhizobiaceae: identification of linear plasmids Open
Members of the family Rhizobiaceae typically have multipartite genomes that are split between two or more replicons, including the chromosome and a variable number of extrachromosomal replicons (chromids and plasmids). Nearly all Rhizobiac…
View article: Selective recruitment of beneficial microbes in the rhizosphere of maize affected by microbial inoculants, farming practice, and seasonal variations
Selective recruitment of beneficial microbes in the rhizosphere of maize affected by microbial inoculants, farming practice, and seasonal variations Open
Background Plant beneficial microorganisms as inoculants can improve crop performance, but factors affecting their impact on plant performance under field conditions remain unclear, thereby limiting their use in farming. Here, we investiga…
View article: Two decades long-term field trial data on fertilization, tillage, and crop rotation focusing on soil microbes
Two decades long-term field trial data on fertilization, tillage, and crop rotation focusing on soil microbes Open
View article: Microbial inoculants modulate the rhizosphere microbiome, alleviate plant stress responses, and enhance maize growth at field scale
Microbial inoculants modulate the rhizosphere microbiome, alleviate plant stress responses, and enhance maize growth at field scale Open
View article: Novel insights into the genome organization of <i>Rhizobiaceae</i> : identification of linear plasmids
Novel insights into the genome organization of <i>Rhizobiaceae</i> : identification of linear plasmids Open
2. Abstract Members of the family Rhizobiaceae typically have multipartite genomes, that are split between two or more replicons, including the chromosome and a variable number of extrachromosomal replicons (chromids and plasmids). Nearly …
View article: Plant-beneficial bacteria are promoted in pasture-crop rotations in the Uruguayan Pampa, contributing to soil health and crop performance
Plant-beneficial bacteria are promoted in pasture-crop rotations in the Uruguayan Pampa, contributing to soil health and crop performance Open
Introduction Understanding how pasture-crop rotation design influences long-term soil health and microbial dynamics is crucial for sustainable agroecosystems. Pasture-crop rotations may alleviate soil degradation, but their long-term effec…
View article: Catch crop amendments and microbial inoculants differently modulate apple rhizosphere microbiomes and plant responses
Catch crop amendments and microbial inoculants differently modulate apple rhizosphere microbiomes and plant responses Open
Plant–soil feedback and soil microbial legacies play crucial roles in replanting success of apple. This study investigated how different soil amendment strategies influence these factors in replant disease-affected soil. Two approaches wer…
View article: Large-scale exponential correlations of nonaffine elastic response of strongly disordered materials
Large-scale exponential correlations of nonaffine elastic response of strongly disordered materials Open
The correlation properties of nonaffine elastic response in strongly disordered materials are investigated using the theory of correlated random matrices and numerical models. The random matrix theory shows that the divergence of the nonaf…
View article: Selective recruitment of beneficial microbes in the rhizosphere of maize affected by microbial inoculants, farming practice, and seasonal variations
Selective recruitment of beneficial microbes in the rhizosphere of maize affected by microbial inoculants, farming practice, and seasonal variations Open
Background Plant beneficial microorganisms as inoculants can improve crop performance, but factors affecting their impact on plant performance under field conditions remain unclear, thereby limiting their use in farming. Here, we investiga…
View article: Inoculation of wild type or EPS mutant Bacillus subtilis does not alter rhizocompetence, soil EPS, and tomato growth in the absence of stress
Inoculation of wild type or EPS mutant Bacillus subtilis does not alter rhizocompetence, soil EPS, and tomato growth in the absence of stress Open
View article: Exploring the potential of seed inoculation with microbial consortia to mitigate drought stress in maize plants under greenhouse conditions
Exploring the potential of seed inoculation with microbial consortia to mitigate drought stress in maize plants under greenhouse conditions Open
Background and aims Plant-beneficial microbes may attenuate climate change-induced stresses on plants such as drought. We investigated the potential of beneficial microbial consortia (BMc) on plant growth and rhizosphere bacterial/archaeal…
View article: Bacillus seed coating mitigates early growth reduction in successive winter wheat without altering rhizosphere bacterial and archaeal communities
Bacillus seed coating mitigates early growth reduction in successive winter wheat without altering rhizosphere bacterial and archaeal communities Open
View article: Microbial inoculants modulate the rhizosphere microbiome, alleviate plant stress responses and enhance maize growth at field scale
Microbial inoculants modulate the rhizosphere microbiome, alleviate plant stress responses and enhance maize growth at field scale Open
Background Field inoculation of crops with beneficial microbes is a promising sustainable strategy to enhance plant fitness and nutrient acquisition. However, effectiveness can vary due to environmental factors, microbial competition, and …
View article: The Microbiome of Continuous Wheat Rotations: Minor Shifts in Bacterial and Archaeal Communities but a Source for Functionally Active Plant-Beneficial Bacteria
The Microbiome of Continuous Wheat Rotations: Minor Shifts in Bacterial and Archaeal Communities but a Source for Functionally Active Plant-Beneficial Bacteria Open
Continuous wheat cropping often leads to yield decline, with suspected causes including increased pathogen susceptibility, decreased root growth, or low nutrient use efficiency, although the exact causes remain unknown. Here, we investigat…
View article: Foundations for a national assessment of soil biodiversity
Foundations for a national assessment of soil biodiversity Open
Soils, just like all other ecosystem compartments, change over time and, consequently, conditions for soil‐inhabiting organisms are also changing, affecting their composition and diversity. Soil biodiversity is a critical component of ecos…
View article: Root windows – a tool to study relationships between rhizosphere processes, soil-microbial communities, and plant performance under field conditions?
Root windows – a tool to study relationships between rhizosphere processes, soil-microbial communities, and plant performance under field conditions? Open
Background and Aims: Root observation windows (RW) installed in the field provide a tool for non-destructive monitoring of root development and rhizosphere processes. However, the highly invasive installation process, requiring cutting of …
View article: Pasture-crop rotations modulate the soil and rhizosphere microbiota and preserve soil structure supporting oat cultivation in the Pampa biome
Pasture-crop rotations modulate the soil and rhizosphere microbiota and preserve soil structure supporting oat cultivation in the Pampa biome Open
View article: Datathons: fostering equitability in data reuse in ecology
Datathons: fostering equitability in data reuse in ecology Open
Approaches to rapidly collecting global biodiversity data are increasingly important, but biodiversity blind spots persist. We organized a three-day Datathon event to improve the openness of local biodiversity data and facilitate data reus…
View article: Long-term conservation tillage with reduced nitrogen fertilization intensity can improve winter wheat health via positive plant–microorganism feedback in the rhizosphere
Long-term conservation tillage with reduced nitrogen fertilization intensity can improve winter wheat health via positive plant–microorganism feedback in the rhizosphere Open
Microbiome-based solutions are regarded key for sustainable agroecosystems. However, it is unclear how agricultural practices affect the rhizosphere microbiome, plant–microorganism interactions and crop performance under field conditions. …
View article: Alone as effective as together: AMF and <i>Trichoderma</i> inoculation boost maize performance but differentially shape soil and rhizosphere microbiota
Alone as effective as together: AMF and <i>Trichoderma</i> inoculation boost maize performance but differentially shape soil and rhizosphere microbiota Open
Introduction Inoculation of plants with beneficial microorganisms may improve plant performance yet suffers from efficacy variability. A solution might be the combined application of different inoculants as consortium. The objective of the…
View article: Extracellular polymeric substances are closely related to land cover, microbial communities, and enzyme activity in tropical soils
Extracellular polymeric substances are closely related to land cover, microbial communities, and enzyme activity in tropical soils Open
Extracellular polymeric substances (EPS) form the main matrix of microbial biofilms and play a crucial role in maintaining microbial life. However, factors influencing EPS concentration and production in soil are poorly understood. Here we…
View article: Datathons: fostering equitability in data reuse in ecology
Datathons: fostering equitability in data reuse in ecology Open
In the midst of a looming global biodiversity crisis, approaches to rapidly collect, curate, catalog, and integrate biodiversity data at global scales are more important than ever before1. Historically, data collection and reuse have been …
View article: Datathons: fostering equitability in data reuse in ecology
Datathons: fostering equitability in data reuse in ecology Open
In the midst of a looming global biodiversity crisis, approaches to rapidly collect, curate, catalog, and integrate biodiversity data at global scales are more important than ever before1. Historically, data collection and reuse have been …
View article: Beneficial microbial consortium improves winter rye performance by modulating bacterial communities in the rhizosphere and enhancing plant nutrient acquisition
Beneficial microbial consortium improves winter rye performance by modulating bacterial communities in the rhizosphere and enhancing plant nutrient acquisition Open
The beneficial effect of microbial consortium application on plants is strongly affected by soil conditions, which are influenced by farming practices. The establishment of microbial inoculants in the rhizosphere is a prerequisite for succ…
View article: Extracellular polymeric substances are closely related to land cover, microbial communities, and enzyme activity in tropical soils
Extracellular polymeric substances are closely related to land cover, microbial communities, and enzyme activity in tropical soils Open
These are datasets and R codes linked to the paper: Extracellular polymeric substances are closely related to land cover, microbial communities, and enzyme activity in tropical soils.
View article: Extracellular polymeric substances are closely related to land cover, microbial communities, and enzyme activity in tropical soils
Extracellular polymeric substances are closely related to land cover, microbial communities, and enzyme activity in tropical soils Open
These are datasets and R codes linked to the paper: Extracellular polymeric substances are closely related to land cover, microbial communities, and enzyme activity in tropical soils.
View article: Contamination of organic raw materials and recycled organic fertilizers with antibiotics
Contamination of organic raw materials and recycled organic fertilizers with antibiotics Open
Since the resources for mineral fertilizers are limited and the energy costs have recently risen considerably, there is an increasing interest in closing nutrient cycles and the recycling of nitrogen and phosphorus in secondary raw materia…
View article: Preceding crop history modulates the early growth of winter wheat by influencing root growth dynamics and rhizosphere processes
Preceding crop history modulates the early growth of winter wheat by influencing root growth dynamics and rhizosphere processes Open
Self-succession of winter wheat (WW) in crop rotations results in substantial yield decline. This decline has been mostly attributed to the soil-borne fungus Gaeumannomyces graminis var. tritici (Ggt; take-all) causing earlier root senesce…
View article: Pasture-Crop Rotations Modulate the Soil and Rhizosphere Microbiota and Preserve Soil Structure Supporting Oat Cultivation in the Pampa Biome
Pasture-Crop Rotations Modulate the Soil and Rhizosphere Microbiota and Preserve Soil Structure Supporting Oat Cultivation in the Pampa Biome Open