Duke Pauli
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View article: Draft genome sequences of five endophytic fungi isolated from <i>Lactuca serriola</i> , a wild relative of cultivated lettuce
Draft genome sequences of five endophytic fungi isolated from <i>Lactuca serriola</i> , a wild relative of cultivated lettuce Open
We present draft genome sequences of five endophytic fungi from Lactuca serriola L., a wild relative of cultivated lettuce: Alternaria postmessia , two Alternaria alternata variants, Fusarium falciforme , and Aspergillus terreus . Isolates…
View article: Genomes of three root-associated bacteria isolated from <i>Sorghum bicolor</i> L. Moench under arid-land conditions
Genomes of three root-associated bacteria isolated from <i>Sorghum bicolor</i> L. Moench under arid-land conditions Open
Diverse Proteobacteria and Actinobacteria affiliate with plants, including strains associated with plant growth and resilience. Here, we share annotated genome sequences for three root-associated bacteria isolated from Sorghum bicolor L. M…
View article: Biosynthetic potential of the culturable foliar fungi associated with field-grown lettuce
Biosynthetic potential of the culturable foliar fungi associated with field-grown lettuce Open
View article: Integration of crop modeling and sensing into molecular breeding for nutritional quality and stress tolerance
Integration of crop modeling and sensing into molecular breeding for nutritional quality and stress tolerance Open
View article: High-resolution phenomics dataset collected on a field-grown, EMS-mutagenized sorghum population evaluated in hot, arid conditions
High-resolution phenomics dataset collected on a field-grown, EMS-mutagenized sorghum population evaluated in hot, arid conditions Open
View article: Identification of a volatile chemotype associated with resilience to water stress in domesticated varieties of Cotton
Identification of a volatile chemotype associated with resilience to water stress in domesticated varieties of Cotton Open
Volatile organic compounds (VOCs) mediate plant responses to environmental stresses, yet their chemotypic variation and drought responsiveness remain poorly characterized in domesticated crops. Here, we identify a previously undocumented b…
View article: Untargeted metabolomics unveils an accumulation of flavonoids associated with the microbiome of low-performing sorghum
Untargeted metabolomics unveils an accumulation of flavonoids associated with the microbiome of low-performing sorghum Open
View article: HAMRLNC: A Comprehensive Pipeline for High-throughput Analysis of Modified Ribonucleotides and Long Non-Coding Ribonucleic Acids
HAMRLNC: A Comprehensive Pipeline for High-throughput Analysis of Modified Ribonucleotides and Long Non-Coding Ribonucleic Acids Open
Summary As sequencing technologies advance and costs decline, there has been a surge in the application of RNA sequencing (RNA-seq) in understanding biological processes. In addition to the typical uses of RNA-seq for transcriptomics, gene…
View article: High-resolution phenomics dataset collected on a field-grown, EMS- mutagenized sorghum population evaluated in hot, arid conditions
High-resolution phenomics dataset collected on a field-grown, EMS- mutagenized sorghum population evaluated in hot, arid conditions Open
Objectives: The University of Arizona Field Scanner (FS) is capable of generating massive amounts of data from a variety of instruments at high spatial and temporal resolution. The accompanying field infrastructure beneath the system offer…
View article: Untargeted metabolomics unveils an accumulation of flavonoids associated with the microbiome of low-performing sorghum
Untargeted metabolomics unveils an accumulation of flavonoids associated with the microbiome of low-performing sorghum Open
The plant metabolome wields a strong influence on its associated microbiome, with feedback from the microbiome in turn influencing plant resilience and productivity. The root metabolome represents a key element of the chemical signaling th…
View article: The mRNA covalent modification dihydrouridine regulates transcript turnover and photosynthetic capacity during plant abiotic stress
The mRNA covalent modification dihydrouridine regulates transcript turnover and photosynthetic capacity during plant abiotic stress Open
RNA Covalent Modifications (RCMs) are post-transcriptional chemical alterations that influence RNA stability and translation efficiency, thus play critical roles in eukaryotic growth and development. However, their role in regulating plant…
View article: OPEN-Augmented Reality GUI for Bioenergy Crop Phenotyping and Precision Agriculture (Donald Danforth Plant Science Center Final Scientific Technical Report)
OPEN-Augmented Reality GUI for Bioenergy Crop Phenotyping and Precision Agriculture (Donald Danforth Plant Science Center Final Scientific Technical Report) Open
The project led by the Donald Danforth Plant Science Center, in collaboration with Arizona State University, George Washington University, and Saint Louis University, has made significant strides in advancing the phenotypic analysis of bio…
View article: Quantifying leaf symptoms of sorghum charcoal rot in images of field‐grown plants using deep neural networks
Quantifying leaf symptoms of sorghum charcoal rot in images of field‐grown plants using deep neural networks Open
Charcoal rot of sorghum (CRS) is a significant disease affecting sorghum crops, with limited genetic resistance available. The causative agent, Macrophomina phaseolina (Tassi) Goid, is a highly destructive fungal pathogen that targets over…
View article: Regulation of a single inositol 1‐phosphate synthase homeologue by <scp>HSFA6B</scp> contributes to fibre yield maintenance under drought conditions in upland cotton
Regulation of a single inositol 1‐phosphate synthase homeologue by <span>HSFA6B</span> contributes to fibre yield maintenance under drought conditions in upland cotton Open
Summary Drought stress substantially impacts crop physiology resulting in alteration of growth and productivity. Understanding the genetic and molecular crosstalk between stress responses and agronomically important traits such as fibre yi…
View article: Genome resources for three modern cotton lines guide future breeding efforts
Genome resources for three modern cotton lines guide future breeding efforts Open
View article: Quantifying Leaf Symptoms of Sorghum Charcoal Rot in Images of Field-Grown Plants Using Deep Neural Networks
Quantifying Leaf Symptoms of Sorghum Charcoal Rot in Images of Field-Grown Plants Using Deep Neural Networks Open
Charcoal rot of sorghum (CRS) is a significant disease affecting sorghum crops, with limited genetic resistance available. The causative agent, Macrophomina phaseolina (Tassi) Goid, is a highly destructive fungal pathogen that targets over…
View article: PlantSegNet: 3D point cloud instance segmentation of nearby plant organs with identical semantics
PlantSegNet: 3D point cloud instance segmentation of nearby plant organs with identical semantics Open
View article: Monitoring cotton water status with microtensiometers
Monitoring cotton water status with microtensiometers Open
Stem water potential (Ψ stem ) is a key indicator for assessing plant water status, which is crucial in understanding plant health and productivity. However, existing measurement methods for Ψ stem , characterized by destructiveness and in…
View article: The Root Endophytic Microbiome Shifts Under Drought in High-Performing Sorghum
The Root Endophytic Microbiome Shifts Under Drought in High-Performing Sorghum Open
Plant-associated microbes contribute to crop health and resilience, potentially extending or complementing plant traits under abiotic stress. Here we tested a series of hypotheses centered on the fungal mycobiome and bacterial microbiome o…
View article: Leaf cuticular wax composition of a genetically diverse collection of lettuce (Lactuca sativa L.) cultivars evaluated under field conditions
Leaf cuticular wax composition of a genetically diverse collection of lettuce (Lactuca sativa L.) cultivars evaluated under field conditions Open
View article: A proximal sensing cart and custom cooling box for improved hyperspectral sensing in a desert environment
A proximal sensing cart and custom cooling box for improved hyperspectral sensing in a desert environment Open
Background Advancements in field spectrometry have the potential to increase understanding of crop growth and development in response to hot and dry environments. However, as with any instrument used for scientific advancement, it is impor…
View article: PhytoOracle: Scalable, modular phenomics data processing pipelines
PhytoOracle: Scalable, modular phenomics data processing pipelines Open
As phenomics data volume and dimensionality increase due to advancements in sensor technology, there is an urgent need to develop and implement scalable data processing pipelines. Current phenomics data processing pipelines lack modularity…
View article: Selection of favorable alleles of genes controlling flowering and senescence improves malt barley quality
Selection of favorable alleles of genes controlling flowering and senescence improves malt barley quality Open
View article: Regulation of a single Inositol 1-Phosphate Synthase homeolog by HSFA6B contributes to fiber yield maintenance under drought conditions in upland cotton
Regulation of a single Inositol 1-Phosphate Synthase homeolog by HSFA6B contributes to fiber yield maintenance under drought conditions in upland cotton Open
Drought stress substantially impacts crop physiology resulting in alteration of growth and productivity. Understanding the genetic and molecular crosstalk between stress responses and agronomically important traits such as fiber yield is p…
View article: UAV-Based Thermal Imagery for Detecting Varietal Differences in Cotton
UAV-Based Thermal Imagery for Detecting Varietal Differences in Cotton Open
Earth and Space Science Open Archive Presented WorkOpen AccessYou are viewing the latest version by default [v2]UAV-Based Thermal Imagery for Detecting Varietal Differences in CottonAuthorsSebastianCallejaiDEmmanuelGonzaleziDDukePauliSee a…
View article: Agronomic Outcomes of Precision Irrigation Management Technologies with Varying Complexity
Agronomic Outcomes of Precision Irrigation Management Technologies with Varying Complexity Open
Highlights Cotton yield and water productivity were measured for different precision irrigation management solutions. Agronomic improvements from site-specific irrigation based on spatial FAO-56 crop coefficient data were minor. Thermal re…
View article: MegaStitch: Robust Large-Scale Image Stitching
MegaStitch: Robust Large-Scale Image Stitching Open
We address fast image stitching for large image collections while being robust to drift due to chaining transformations and minimal overlap between images. We focus on scientific applications where ground-truth accuracy is far more\nimport…
View article: UAV-Based Thermal Imagery for Detecting Varietal Differences in Cotton
UAV-Based Thermal Imagery for Detecting Varietal Differences in Cotton Open
Earth and Space Science Open Archive Presented WorkOpen AccessYou are viewing an older version [v1]Go to new versionUAV-Based Thermal Imagery for Detecting Varietal Differences in CottonAuthorsSebastianCallejaiDEmmanuelGonzaleziDDukePauliS…
View article: PhytoOracle: Scalable, modular phenomic data processing pipelines
PhytoOracle: Scalable, modular phenomic data processing pipelines Open
Earth and Space Science Open Archive This is a preprint and has not been peer reviewed. ESSOAr is a venue for early communication or feedback before peer review. Data may be preliminary.Learn more about preprints preprintOpen AccessYou are…
View article: Improvements on Multiway ICP Registration for Reconstructing Individual Plants from 3D Field Scans
Improvements on Multiway ICP Registration for Reconstructing Individual Plants from 3D Field Scans Open
Earth and Space Science Open Archive Presented WorkOpen AccessYou are viewing the latest version by default [v1]Improvements on Multiway ICP Registration for Reconstructing Individual Plants from 3D Field ScansAuthorsNathanialHendleriDEmma…