Duygu Kabakci-Zorlu
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View article: Two-sample KS test with approxQuantile in Apache Spark
Two-sample KS test with approxQuantile in Apache Spark Open
The classical two-sample test of Kolmogorov-Smirnov (KS) is widely used to test whether empirical samples come from the same distribution. Even though most statistical packages provide an implementation, carrying out the test in big data s…
View article: A monitoring framework for deployed machine learning models with supply chain examples
A monitoring framework for deployed machine learning models with supply chain examples Open
Actively monitoring machine learning models during production operations helps ensure prediction quality and detection and remediation of unexpected or undesired conditions. Monitoring models already deployed in big data environments bring…
View article: Pan-African genome demonstrates how population-specific genome graphs improve high-throughput sequencing data analysis
Pan-African genome demonstrates how population-specific genome graphs improve high-throughput sequencing data analysis Open
View article: PrecisionFDA Truth Challenge V2: Calling variants from short and long reads in difficult-to-map regions
PrecisionFDA Truth Challenge V2: Calling variants from short and long reads in difficult-to-map regions Open
View article: Population-specific genome graphs improve high-throughput sequencing data analysis: A case study on the Pan-African genome
Population-specific genome graphs improve high-throughput sequencing data analysis: A case study on the Pan-African genome Open
Graph-based genome reference representations have seen significant development, motivated by the inadequacy of the current human genome reference to represent the diverse genetic information from different human populations and its inabili…
View article: precisionFDA Truth Challenge V2: Calling variants from short- and long-reads in difficult-to-map regions
precisionFDA Truth Challenge V2: Calling variants from short- and long-reads in difficult-to-map regions Open
Summary The precisionFDA Truth Challenge V2 aimed to assess the state-of-the-art of variant calling in difficult-to-map regions and the Major Histocompatibility Complex (MHC). Starting with FASTQ files, 20 challenge participants applied th…