E. Anne Hatmaker
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View article: Population-Specific Transcriptomic Shifts Underlie Secondary Metabolic Diversification in <i>Aspergillus flavus</i> and the Domestication of <i>Aspergillus oryzae</i>
Population-Specific Transcriptomic Shifts Underlie Secondary Metabolic Diversification in <i>Aspergillus flavus</i> and the Domestication of <i>Aspergillus oryzae</i> Open
The genomic signatures of microbial domestication remain poorly understood within the context of natural population variation. Here, we demonstrate that Aspergillus oryzae , the filamentous fungus used in soy sauce production, shares more …
View article: Population structure in a fungal human pathogen is potentially linked to pathogenicity
Population structure in a fungal human pathogen is potentially linked to pathogenicity Open
Aspergillus flavus is a clinically and agriculturally important saprotrophic fungus responsible for severe human infections and extensive crop losses. Here, we analyze genomic data from 300 (117 clinical and 183 environmental) A. flavus is…
View article: Pathogenicity is associated with population structure in a fungal pathogen of humans
Pathogenicity is associated with population structure in a fungal pathogen of humans Open
Aspergillus flavus is a clinically and agriculturally important saprotrophic fungus responsible for severe human infections and extensive crop losses. We analyzed genomic data from 250 (95 clinical and 155 environmental) A. flavus isolates…
View article: Draft genomes of <i>Aspergillus nomiae</i> and <i>Aspergillus tamarii</i> isolates from human eye infections
Draft genomes of <i>Aspergillus nomiae</i> and <i>Aspergillus tamarii</i> isolates from human eye infections Open
Fungal species within the genus Aspergillus are an important cause of human diseases, including aspergillosis and keratitis. We present draft genomes of Aspergillus tamarii and A. nomiae isolated from keratitis patients in a U.S. tertiary …
View article: A comprehensive map of hotspots of <i>de novo</i> telomere addition in <i>Saccharomyces cerevisiae</i>
A comprehensive map of hotspots of <i>de novo</i> telomere addition in <i>Saccharomyces cerevisiae</i> Open
Telomere healing occurs when telomerase, normally restricted to chromosome ends, acts upon a double-strand break to create a new, functional telomere. De novo telomere addition (dnTA) on the centromere-proximal side of a break truncates th…
View article: A comprehensive map of hotspots of de novo telomere addition in<i>Saccharomyces cerevisiae</i>
A comprehensive map of hotspots of de novo telomere addition in<i>Saccharomyces cerevisiae</i> Open
Telomere healing occurs when telomerase, normally restricted to chromosome ends, acts upon a double-strand break to create a new, functional telomere. De novo telomere addition on the centromere-proximal side of a break truncates the chrom…
View article: Genomic and Phenotypic Trait Variation of the Opportunistic Human Pathogen Aspergillus flavus and Its Close Relatives
Genomic and Phenotypic Trait Variation of the Opportunistic Human Pathogen Aspergillus flavus and Its Close Relatives Open
Aspergillus flavus is a filamentous fungus that causes opportunistic human infections, such as aspergillosis and fungal keratitis, but its close relatives are considered nonpathogenic. To begin understanding how this difference in pathogen…
View article: Evolution and codon usage bias of mitochondrial and nuclear genomes in <i>Aspergillus</i> section <i>Flavi</i>
Evolution and codon usage bias of mitochondrial and nuclear genomes in <i>Aspergillus</i> section <i>Flavi</i> Open
The fungal genus Aspergillus contains a diversity of species divided into taxonomic sections of closely related species. Section Flavi contains 33 species, many of industrial, agricultural, or medical relevance. Here, we analyze the mitoch…
View article: Draft Genome Sequence of an Aspergillus Strain Isolated from a Honey Bee Pupa
Draft Genome Sequence of an Aspergillus Strain Isolated from a Honey Bee Pupa Open
Insect-associated fungi play an important role in wild and agricultural communities. We present a draft genome sequence of an entomopathogenic strain from the fungal genus Aspergillus , isolated from a honey bee pupa.
View article: Evolution and codon usage bias of mitochondrial and nuclear genomes in <i>Aspergillus</i> section <i>Flavi</i>
Evolution and codon usage bias of mitochondrial and nuclear genomes in <i>Aspergillus</i> section <i>Flavi</i> Open
The fungal genus Aspergillus contains a diversity of species divided into taxonomic sections of closely related species. Section Flavi contains 33 species, many of industrial, agricultural, or medical relevance. Here, we analyze the mitoch…
View article: Genomic and phenotypic trait variation of the opportunistic human pathogen <i>Aspergillus flavus</i> and its non-pathogenic close relatives
Genomic and phenotypic trait variation of the opportunistic human pathogen <i>Aspergillus flavus</i> and its non-pathogenic close relatives Open
Fungal diseases affect millions of humans annually, yet fungal pathogens remain understudied. The mold Aspergillus flavus is a causative agent of both aspergillosis and fungal keratitis infections, but species closely related to A. flavus …
View article: Genomes of Gut Bacteria from <i>Nasonia</i> Wasps Shed Light on Phylosymbiosis and Microbe-Assisted Hybrid Breakdown
Genomes of Gut Bacteria from <i>Nasonia</i> Wasps Shed Light on Phylosymbiosis and Microbe-Assisted Hybrid Breakdown Open
Animal and plant hosts often establish intimate relationships with their microbiomes. In varied environments, closely related host species share more similar microbiomes, a pattern termed phylosymbiosis.
View article: Genomes of gut bacteria from<i>Nasonia</i>wasps shed light on phylosymbiosis and microbe-assisted hybrid breakdown
Genomes of gut bacteria from<i>Nasonia</i>wasps shed light on phylosymbiosis and microbe-assisted hybrid breakdown Open
Phylosymbiosis is a cross-system trend whereby microbial community relationships recapitulate the host phylogeny. In Nasonia parasitoid wasps, phylosymbiosis occurs throughout development, is distinguishable between sexes, and benefits hos…
View article: Complete chloroplast genome comparisons for Pityopsis (Asteraceae)
Complete chloroplast genome comparisons for Pityopsis (Asteraceae) Open
Pityopsis includes several regionally and one federally endangered species of herbaceous perennials. Four species are highly localized, including the federally endangered P . ruthii . The genus includes several ploidy levels and interestin…
View article: Complete Genome Sequences of Four Natural <i>Pseudomonas</i> Isolates That Catabolize a Wide Range of Aromatic Compounds Relevant to Lignin Valorization
Complete Genome Sequences of Four Natural <i>Pseudomonas</i> Isolates That Catabolize a Wide Range of Aromatic Compounds Relevant to Lignin Valorization Open
Many soil microorganisms have evolved catabolic strategies to utilize phenolic compounds arising from depolymerized lignin. We report the complete genome sequences of four Pseudomonas sp. isolates that demonstrated robust growth on a wide …
View article: Revised Transcriptome-Based Gene Annotation for Aspergillus flavus Strain NRRL 3357
Revised Transcriptome-Based Gene Annotation for Aspergillus flavus Strain NRRL 3357 Open
Aspergillus flavus is an agriculturally and medically important filamentous fungus that produces mycotoxins, including aflatoxins, which are potent carcinogens. Here, we generated short- and long-read transcript sequence data from the grow…
View article: Methylome and Complete Genome Sequence of Parageobacillus toebii DSM 14590 <sup>T</sup> , a Thermophilic Bacterium
Methylome and Complete Genome Sequence of Parageobacillus toebii DSM 14590 <sup>T</sup> , a Thermophilic Bacterium Open
Here, we present the first complete genome assembly of the thermophilic bacterium Parageobacillus toebii DSM 14590 T . The P. toebii DSM 14590 T genome consists of a 3,270,071-bp circular chromosome and a 52,989-bp native plasmid.
View article: Complete Genome Sequence of <i>Caloramator</i> sp. Strain E03, a Novel Ethanologenic, Thermophilic, Obligately Anaerobic Bacterium
Complete Genome Sequence of <i>Caloramator</i> sp. Strain E03, a Novel Ethanologenic, Thermophilic, Obligately Anaerobic Bacterium Open
Here, we report the complete genome sequence of Caloramator sp. strain E03, an anaerobic thermophile that was isolated from a hot spring within the Rabbit Creek area of Yellowstone National Park. The assembly contains a single 2,984,770-bp…
View article: Complete Genome Sequences of Two Megasphaera elsdenii Strains, NCIMB 702410 and ATCC 25940
Complete Genome Sequences of Two Megasphaera elsdenii Strains, NCIMB 702410 and ATCC 25940 Open
Here, we report the complete genome sequences of two Megasphaera elsdenii strains, ATCC 25940 and NCIMB 702410. M. elsdenii is an anaerobic bacterium capable of producing butanoate and hexanoate and is a member of the Negativicutes .
View article: Complete Genome Sequence of Salinisphaera sp. Strain LB1, a Moderately Halo-Acidophilic Bacterium Isolated from Lake Brown, Western Australia
Complete Genome Sequence of Salinisphaera sp. Strain LB1, a Moderately Halo-Acidophilic Bacterium Isolated from Lake Brown, Western Australia Open
Salinisphaera sp. strain LB1 was isolated from Lake Brown, Western Australia, surface water enriched at pH 4.0 and with 5% (wt/vol) NaCl.
View article: Population Structure and Genetic Diversity Within the Endangered Species Pityopsis ruthii (Asteraceae)
Population Structure and Genetic Diversity Within the Endangered Species Pityopsis ruthii (Asteraceae) Open
Pityopsis ruthii (Ruth's golden aster) is a federally endangered herbaceous perennial endemic to the Hiwassee and Ocoee Rivers in southeastern Tennessee, United States. Comprehensive genetic studies providing novel information to conservat…
View article: Complete Genome Sequence of Industrial Dairy Strain <i>Streptococcus thermophilus</i> DGCC 7710
Complete Genome Sequence of Industrial Dairy Strain <i>Streptococcus thermophilus</i> DGCC 7710 Open
We report here the complete genome sequence of Streptococcus thermophilus DGCC 7710. S. thermophilus is widely used in industrial dairy production.