Elisabeth Dörner
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View article: Contamination-controlled upper gastrointestinal microbiota profiling reveals salivary-duodenal community types linked to opportunistic pathogen carriage and inflammation
Contamination-controlled upper gastrointestinal microbiota profiling reveals salivary-duodenal community types linked to opportunistic pathogen carriage and inflammation Open
The upper gastrointestinal (uGI) microbiota has been implicated in infectious, metabolic, and immunological conditions, yet remains poorly characterized due to invasive sampling and low microbial biomass. We developed and validated a conta…
View article: Metagenomic strain detection with SameStr: identification of a persisting core gut microbiota transferable by fecal transplantation
Metagenomic strain detection with SameStr: identification of a persisting core gut microbiota transferable by fecal transplantation Open
Background The understanding of how microbiomes assemble, function, and evolve requires metagenomic tools that can resolve microbiota compositions at the strain level. However, the identification and tracking of microbial strains in fecal …
View article: Additional file 7 of Metagenomic strain detection with SameStr: identification of a persisting core gut microbiota transferable by fecal transplantation
Additional file 7 of Metagenomic strain detection with SameStr: identification of a persisting core gut microbiota transferable by fecal transplantation Open
Additional file 6: Table S1. Sample and Case Metadata. Table S2. WGS Accession Identifiers. Table S3. WGS QC Data. Table S4. Reference Accessions. Table S5. Species Metadata. Table S6. Logistic Regression of (Un)related Sample Pairs at Tax…
View article: Bacterial microbiota diversity and composition in red and white wines correlate with plant-derived DNA contributions and botrytis infection
Bacterial microbiota diversity and composition in red and white wines correlate with plant-derived DNA contributions and botrytis infection Open
Wine is a globally produced, marketed and consumed alcoholic beverage, which is valued for its aromatic and qualitative complexity and variation. These properties are partially attributable to the bacterial involvement in the fermentation …
View article: Qualitative and Quantitative DNA- and RNA-Based Analysis of the Bacterial Stomach Microbiota in Humans, Mice, and Gerbils
Qualitative and Quantitative DNA- and RNA-Based Analysis of the Bacterial Stomach Microbiota in Humans, Mice, and Gerbils Open
Clinical stomach interventions, such as acid inhibition or bypass surgery, have been linked to fecal microbiota alterations. We demonstrate that the stomach microbiota largely overlaps those of adjacent gastrointestinal locations and ident…
View article: High intake of orange juice and cola differently affects metabolic risk in healthy subjects
High intake of orange juice and cola differently affects metabolic risk in healthy subjects Open
Despite its sugar content, regular consumption of large amounts of OJ do not increase the risk of gout but may even contribute to lower uric acid levels. The etiology of impaired insulin secretion with cola consumption needs to be further …