Elizabeth Sinclair
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View article: The chromosomal genome sequence of the photosymbiotic ascidian, Trididemnum clinides Kott, 1977 and its associated microbial metagenome sequences
The chromosomal genome sequence of the photosymbiotic ascidian, Trididemnum clinides Kott, 1977 and its associated microbial metagenome sequences Open
We present a genome assembly from a specimen of Trididemnum clinides (photosymbiotic ascidian; Chordata; Ascidiacea; Aplousobranchia; Didemnidae). The T. clinides genome sequence has a total length of 906.92 megabases. Most of the assembly…
View article: The chromosomal genome sequence of the sponge, Corticium candelabrum Schmidt, 1862 and its associated microbial metagenome sequences
The chromosomal genome sequence of the sponge, Corticium candelabrum Schmidt, 1862 and its associated microbial metagenome sequences Open
We present a genome assembly from a specimen of Corticium candelabrum (sponge; Porifera; Homoscleromorpha; Homosclerophorida; Plakinidae). The genome sequence has a total length of 185.49 megabases. Most of the assembly (99.4%) is scaffol…
View article: The chromosomal genome sequence of the giant barrel sponge, Xestospongia muta Schmidt 1870 and its associated microbial metagenome sequences
The chromosomal genome sequence of the giant barrel sponge, Xestospongia muta Schmidt 1870 and its associated microbial metagenome sequences Open
We present a genome assembly from a specimen of Xestospongia muta (Caribbean barrel sponge; Porifera; Demospongiae; Haplosclerida; Petrosiidae). The genome sequence has a total length of 158.52 megabases. Most of the assembly (99.56%) is s…
View article: Sanger Tree of Life Sample Homogenisation: Sponge Squeezing v1
Sanger Tree of Life Sample Homogenisation: Sponge Squeezing v1 Open
This protocol is for the homogenisation of sponge samples for HMW DNA extraction and/or HiC, intended for long read sequencing. In the phylum Porifera, most marine demosponges (Demospongia) species possess a siliceous skeleton and spicules…
View article: The chromosomal genome sequence of blue blubber, Catostylus mosaicus (Quoy & Gaimard, 1824) and its associated microbial metagenome sequences
The chromosomal genome sequence of blue blubber, Catostylus mosaicus (Quoy & Gaimard, 1824) and its associated microbial metagenome sequences Open
We present a genome assembly from a specimen of Catostylus mosaicus (blue blubber; Cnidaria; Scyphozoa; Rhizostomeae; Catostylidae). The genome sequence has a total length of 217.98 megabases. Most of the assembly (99.58%) is scaffolded in…
View article: The chromosomal genome sequence of the Seven Luminaries Vent Mussel, Bathymodiolus septemdierum Hashimoto & Okutani, 1994, and its associated microbial metagenome sequences
The chromosomal genome sequence of the Seven Luminaries Vent Mussel, Bathymodiolus septemdierum Hashimoto & Okutani, 1994, and its associated microbial metagenome sequences Open
We present a genome assembly from a specimen of Bathymodiolus septemdierum (Seven Luminaries Vent Mussel; Mollusca; Bivalvia; Mytilida; Mytilidae). The genome sequence has a total length of 1,428.15 megabases. Most of the assembly (99.29%)…
View article: The chromosomal genome sequence of the marine sponge Diacarnus erythraeanus Kelly-Borges & Vacelet, 1995, and its associated microbial metagenome sequences
The chromosomal genome sequence of the marine sponge Diacarnus erythraeanus Kelly-Borges & Vacelet, 1995, and its associated microbial metagenome sequences Open
We present a genome assembly from an individual Diacarnus erythraeanus (sponge; Porifera; Demospongiae; Poecilosclerida; Podospongiidae). The genome sequence has a total length of 140.86 megabases. Most of the assembly (98.57%) is scaffold…
View article: The chromosomal genome sequence of the elephant ear sponge, Spongia lamella (Schulze, 1879), and its associated microbial metagenome sequences
The chromosomal genome sequence of the elephant ear sponge, Spongia lamella (Schulze, 1879), and its associated microbial metagenome sequences Open
We present a genome assembly from a specimen of Spongia lamella (Elephant ear; Porifera; Demospongiae; Dictyoceratida; Spongiidae). The genome sequence has a total length of 130.43 megabases. Most of the assembly (98.43%) is scaffolded int…
View article: The chromosomal genome sequence of the Maltese sponge, Agelas oroides (Schmidt, 1864), and its associated microbial metagenome sequences
The chromosomal genome sequence of the Maltese sponge, Agelas oroides (Schmidt, 1864), and its associated microbial metagenome sequences Open
We present a genome assembly from a specimen of Agelas oroides (Maltese sponge; Porifera; Demospongiae; Agelasida; Agelasidae). The genome sequence has a total length of 260.66 megabases. Most of the assembly (98.43%) is scaffolded into 2…
View article: The chromosomal genome sequence of the stone sponge Petrosia ficiformis (Poiret, 1789) and its associated microbial metagenome sequences
The chromosomal genome sequence of the stone sponge Petrosia ficiformis (Poiret, 1789) and its associated microbial metagenome sequences Open
We present a genome assembly from an individual Petrosia ficiformis (stone sponge; Porifera; Demospongiae; Haplosclerida; Petrosiidae). The genome sequence is 191.3 megabases in span. Most of the assembly is scaffolded into 18 chromosomal…
View article: The chromosomal genome sequence of the mollusc, Ctena decussata (O.G.Costa, 1829) and its bacterial endosymbiont Candidatus Thiodiazotropha sp. CDECU1 (Chromatiales)
The chromosomal genome sequence of the mollusc, Ctena decussata (O.G.Costa, 1829) and its bacterial endosymbiont Candidatus Thiodiazotropha sp. CDECU1 (Chromatiales) Open
We present a genome assembly from a specimen of Ctena decussata (Mollusca; Bivalvia; Lucinida; Lucinidae). The genome sequence has a total length of 1,658.05 megabases. Most of the assembly (97.83%) is scaffolded into 18 chromosomal pseudo…
View article: The chromosomal genome sequence of Mound Coral, Porites lutea Milne Edwards & Haime, 1851 and its associated microbial metagenome sequences
The chromosomal genome sequence of Mound Coral, Porites lutea Milne Edwards & Haime, 1851 and its associated microbial metagenome sequences Open
We present a genome assembly from a specimen of Porites lutea (Mound Coral; Cnidaria; Anthozoa; Scleractinia; Poritidae). The genome sequence has a total length of 541.64 megabases. Most of the assembly (99.5%) is scaffolded into 14 chromo…
View article: The chromosomal genome sequence of the photosymbiotic ascidian, Trididemnum clinides Kott, 1977 and its associated microbial metagenome sequences
The chromosomal genome sequence of the photosymbiotic ascidian, Trididemnum clinides Kott, 1977 and its associated microbial metagenome sequences Open
We present a genome assembly from a specimen of Trididemnum clinides (photosymbiotic ascidian; Chordata; Ascidiacea; Aplousobranchia; Didemnidae). The T. clinides genome sequence has a total length of 906.92 megabases. Most of the assembl…
View article: The chromosomal genome sequence of the fan worm Protula sp. (Serpulidae, Sabellida)
The chromosomal genome sequence of the fan worm Protula sp. (Serpulidae, Sabellida) Open
We present a genome assembly from a specimen of Protula sp. h YS-2021 (fan worm; Annelida; Polychaeta; Sabellida; Serpulidae). The genome sequence has a total length of 863.48 megabases. Most of the assembly (99.04%) is scaffolded into 11 …
View article: The chromosomal genome sequence of the bigfin reef squid, Sepioteuthis lessoniana d'Orbigny, 1826 and its associated microbial metagenome sequences
The chromosomal genome sequence of the bigfin reef squid, Sepioteuthis lessoniana d'Orbigny, 1826 and its associated microbial metagenome sequences Open
We present a genome assembly from a specimen of Sepioteuthis lessoniana (bigfin reef squid; Mollusca; Cephalopoda; Myopsida; Loliginidae). The genome sequence has a total length of 5,056.23 megabases. Most of the assembly (86.4%) is scaffo…
View article: The chromosomal genome sequence of the sponge Cliona cf. orientalis Thiele (1900) and its associated microbial metagenome sequences
The chromosomal genome sequence of the sponge Cliona cf. orientalis Thiele (1900) and its associated microbial metagenome sequences Open
We present a genome assembly from a specimen of Cliona cf. orientalis (Porifera; Demospongiae; Clionaida; Clionaidae). The genome sequence has a total length of 217.17 megabases. Most of the assembly (98.28%) is scaffolded into 19 chromos…
View article: The scaffold-level genome sequence of an encrusting sponge, Halisarca caerulea Vacelet & Donadey, 1987, and its associated microbial metagenome sequences
The scaffold-level genome sequence of an encrusting sponge, Halisarca caerulea Vacelet & Donadey, 1987, and its associated microbial metagenome sequences Open
We present a scaffold-level genome assembly from a Halisarca caerulea specimen (encrusting sponge; Porifera; Demospongiae; Chondrillida; Halisarcidae). The genome sequence is 195.70 megabases in span. The mitochondrial genome has also been…
View article: The chromosomal genome sequence of the sponge, Oscarella lobularis (Schmidt, 1862) (Porifera, Homoscleromorpha) and its associated microbial metagenome sequences
The chromosomal genome sequence of the sponge, Oscarella lobularis (Schmidt, 1862) (Porifera, Homoscleromorpha) and its associated microbial metagenome sequences Open
We present a genome assembly from an individual Oscarella lobularis (Porifera; Homoscleromorpha; Homosclerophorida; Oscarellidae). The genome sequence is 65.2 megabases in span. Most of the assembly is scaffolded into 20 chromosomal pseudo…
View article: The chromosomal genome sequence of the giant barrel sponge, Xestospongia muta Schmidt 1870 and its associated microbial metagenome sequences
The chromosomal genome sequence of the giant barrel sponge, Xestospongia muta Schmidt 1870 and its associated microbial metagenome sequences Open
We present a genome assembly from a specimen of Xestospongia muta (Caribbean barrel sponge; Porifera; Demospongiae; Haplosclerida; Petrosiidae). The genome sequence has a total length of 158.52 megabases. Most of the assembly (99.56%) is …
View article: The chromosomal genome sequence of the marine leech, Branchellion lobata Moore, 1952 and its associated microbial metagenome sequences
The chromosomal genome sequence of the marine leech, Branchellion lobata Moore, 1952 and its associated microbial metagenome sequences Open
We present a genome assembly from an individual Branchellion lobata (the marine leech; Annelida; Clitellata; Hirudinida; Piscicolidae). The genome sequence is 174.1 megabases in span. Most of the assembly is scaffolded into 17 chromosomal …
View article: The chromosomal genome sequence of the kidney sponge, Chondrosia reniformis Nardo, 1847, and its associated microbial metagenome sequences
The chromosomal genome sequence of the kidney sponge, Chondrosia reniformis Nardo, 1847, and its associated microbial metagenome sequences Open
We present a genome assembly from a specimen of Chondrosia reniformis (kidney sponge; Porifera; Demospongiae; Chondrillida; Chondrillidae). The genome sequence has a total length of 117.37 megabases. Most of the assembly (99.98%) is scaffo…
View article: The chromosomal genome sequence of the glass sponge Aphrocallistes beatrix Gray, 1858 and its associated microbial metagenome sequences
The chromosomal genome sequence of the glass sponge Aphrocallistes beatrix Gray, 1858 and its associated microbial metagenome sequences Open
We present a genome assembly from an individual Aphrocallistes beatrix (Porifera; Hexactinellida; Hexasterophora; Sceptrulophora; Aphrocallistidae). The genome sequence is 100.50 megabases in span. Most of the assembly is scaffolded into 1…
View article: The chromosomal genome sequence of the fragile freshwater sponge, Eunapius fragilis (Leidy, 1851) and its associated microbial metagenome sequences
The chromosomal genome sequence of the fragile freshwater sponge, Eunapius fragilis (Leidy, 1851) and its associated microbial metagenome sequences Open
We present a genome assembly from a specimen of Eunapius fragilis (fragile freshwater sponge; Porifera; Demospongiae; Spongillida; Spongillidae). The genome sequence has a total length of 218.91 megabases. Most of the assembly (99.98%) is…
View article: The chromosomal genome sequence of the sponge Crambe crambe (Schmidt, 1862) and its associated microbial metagenome sequences
The chromosomal genome sequence of the sponge Crambe crambe (Schmidt, 1862) and its associated microbial metagenome sequences Open
We present a genome assembly from an individual Crambe crambe (Porifera; Demospongiae; Poecilosclerida; Crambeidae). The host genome sequence is 143.20 megabases in span. Most of the assembly is scaffolded into 18 chromosomal pseudomolecul…
View article: The chromosomal genome sequence of Aplysina aerophoba (Nardo, 1833) and its associated microbial metagenome sequences
The chromosomal genome sequence of Aplysina aerophoba (Nardo, 1833) and its associated microbial metagenome sequences Open
We present a genome assembly from an individual Aplysina aerophoba (gold sponge; Porifera; Demospongiae; Verongiida; Aplysinidae). The genome sequence is 158.8 megabases in span. Most of the assembly is scaffolded into 22 chromosomal pseud…
View article: The genome sequences of the diplonemid protist Rhynchopus euleeides YPF1915 and its bacterial endosymbiont Candidatus Syngnamydia salmonis (Chlamydiota)
The genome sequences of the diplonemid protist Rhynchopus euleeides YPF1915 and its bacterial endosymbiont Candidatus Syngnamydia salmonis (Chlamydiota) Open
We present a genome assembly of the diplonemid Rhynchopus euleeides (Euglenozoa; Diplonemea; Diplonemea; Diplonemidae). The genome sequence is 199.0 megabases long, with most of the assembly scaffolded into 88 chromosomal pseudomolecules. …
View article: The genome sequences of the woven lucine, Lucinisca nassula (Conrad, 1846) and a bacterial endosymbiont
The genome sequences of the woven lucine, Lucinisca nassula (Conrad, 1846) and a bacterial endosymbiont Open
We present a genome assembly from an individual Lucinisca nassula (the woven lucine; Mollusca; Bivalvia; Lucinida; Lucinidae). The genome sequence is 2,926.50 megabases in span. Most of the assembly is scaffolded into 18 chromosomal pseudo…
View article: The chromosome-level genome sequences of the freshwater sponge, Spongilla lacustris (Linnaeus, 1759) and the chlorophyte cobiont Choricystis sp., and the associated microbial metagenome sequences
The chromosome-level genome sequences of the freshwater sponge, Spongilla lacustris (Linnaeus, 1759) and the chlorophyte cobiont Choricystis sp., and the associated microbial metagenome sequences Open
We present a genome assembly from an individual Spongilla lacustris (freshwater sponge; Porifera; Demospongiae; Spongillida; Spongillidae). The genome sequence is 248.7 megabases in span. Most of the assembly is scaffolded into 23 chromoso…
View article: The genome sequences of the diplonemid protist Diplonema japonicum YPF1604 and its bacterial endosymbionts Ca. Cytomitobacter primus and Ca. Nesciobacter abundans
The genome sequences of the diplonemid protist Diplonema japonicum YPF1604 and its bacterial endosymbionts Ca. Cytomitobacter primus and Ca. Nesciobacter abundans Open
We present a genome assembly of the diplonemid Diplonema japonicum YPF1604 (Discoba; Euglenozoa; Diplonemea; Diplonemidae). The genome sequence is 62.30 megabases in span. Most of the assembly is scaffolded into 118 chromosomal pseudomolec…
View article: On the path to reference genomes for all biodiversity: lessons learned and laboratory protocols created in the Sanger Tree of Life core laboratory over the first 2000 species
On the path to reference genomes for all biodiversity: lessons learned and laboratory protocols created in the Sanger Tree of Life core laboratory over the first 2000 species Open
Since its inception in 2019, the Tree of Life programme at the Wellcome Sanger Institute has released high-quality, chromosomally-resolved reference genome assemblies for over 2000 species. Tree of Life has at its core multiple teams, each…