Emily Telfer
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View article: <i>Pinus radiata</i> genome reveals a downward demographic trajectory and opportunities for genomics-assisted breeding
<i>Pinus radiata</i> genome reveals a downward demographic trajectory and opportunities for genomics-assisted breeding Open
Pinus radiata D. Don is one of the most widely planted exotic conifers. It is also a threatened species because native populations are small, disjunct, and challenged by pests and pathogens, deforestation, and climate maladaptation. Genomi…
View article: High density linkage maps, genetic architecture, and genomic prediction of growth and wood properties in Pinus radiata
High density linkage maps, genetic architecture, and genomic prediction of growth and wood properties in Pinus radiata Open
View article: Genomic selection proof-of-concept in two major conifer species
Genomic selection proof-of-concept in two major conifer species Open
Genomic selection has been successfully implemented in both animal and agricultural crop breeding programmes. Recently, forest tree breeding has also implemented genomic tools to improve the efficiency of breeding and selection procedures.…
View article: Chasing genetic correlation breakers to stimulate population resilience to climate change
Chasing genetic correlation breakers to stimulate population resilience to climate change Open
View article: Development and Validation of a 36K SNP Array for Radiata Pine (Pinus radiata D.Don)
Development and Validation of a 36K SNP Array for Radiata Pine (Pinus radiata D.Don) Open
Radiata pine (Pinus radiata D.Don) is one of the world’s most domesticated pines and a key economic species in New Zealand. Thus, the development of genomic resources for radiata pine has been a high priority for both research and commerci…
View article: Analysis of the transcriptome of the needles and bark of Pinus radiata induced by bark stripping and methyl jasmonate
Analysis of the transcriptome of the needles and bark of Pinus radiata induced by bark stripping and methyl jasmonate Open
View article: Genetic Variation in Drought-Tolerance Traits and Their Relationships to Growth in Pinus radiata D. Don Under Water Stress
Genetic Variation in Drought-Tolerance Traits and Their Relationships to Growth in Pinus radiata D. Don Under Water Stress Open
The selection of drought-tolerant genotypes is globally recognized as an effective strategy to maintain the growth and survival of commercial tree species exposed to future drought periods. New genomic selection tools that reduce the time …
View article: Additional file 10 of High density linkage maps, genetic architecture, and genomic prediction of growth and wood properties in Pinus radiata
Additional file 10 of High density linkage maps, genetic architecture, and genomic prediction of growth and wood properties in Pinus radiata Open
Additional file 10. 850,055 map file. Plain text file containing the map position (cM) of all loci on the 850,055 linkage map, in the format required for analysis using MAPQTL 6.0.
View article: Additional file 7 of High density linkage maps, genetic architecture, and genomic prediction of growth and wood properties in Pinus radiata
Additional file 7 of High density linkage maps, genetic architecture, and genomic prediction of growth and wood properties in Pinus radiata Open
Additional file 7. 268,345 loc file. Plain text file containing the genotype codes for loci in the 268,345 parental map, in the format required for analysis using MAPQTL 6.0.
View article: Additional file 12 of High density linkage maps, genetic architecture, and genomic prediction of growth and wood properties in Pinus radiata
Additional file 12 of High density linkage maps, genetic architecture, and genomic prediction of growth and wood properties in Pinus radiata Open
Additional file 12. 850,055 loc file. Plain text file containing the genotype codes for loci in the 850,055 parental map, in the format required for analysis using MAPQTL 6.0.
View article: Additional file 8 of High density linkage maps, genetic architecture, and genomic prediction of growth and wood properties in Pinus radiata
Additional file 8 of High density linkage maps, genetic architecture, and genomic prediction of growth and wood properties in Pinus radiata Open
Additional file 8. 268,405 loc file. Plain text file containing the genotype codes for loci in the 268,405 parental map, in the format required for analysis using MAPQTL 6.0.
View article: Additional file 6 of High density linkage maps, genetic architecture, and genomic prediction of growth and wood properties in Pinus radiata
Additional file 6 of High density linkage maps, genetic architecture, and genomic prediction of growth and wood properties in Pinus radiata Open
Additional file 6. 268,405 map file. Plain text file containing the map position (cM) of all loci on the 268,405 linkage map, in the format required for analysis using MAPQTL 6.0.
View article: Additional file 14 of High density linkage maps, genetic architecture, and genomic prediction of growth and wood properties in Pinus radiata
Additional file 14 of High density linkage maps, genetic architecture, and genomic prediction of growth and wood properties in Pinus radiata Open
Additional file 14. All traits FWK pop. Plain text file containing the quantitative trait data of all individuals in the QTL population.
View article: Additional file 13 of High density linkage maps, genetic architecture, and genomic prediction of growth and wood properties in Pinus radiata
Additional file 13 of High density linkage maps, genetic architecture, and genomic prediction of growth and wood properties in Pinus radiata Open
Additional file 13. 850,096 loc file. Plain text file containing the genotype codes for loci in the 850,096 parental map, in the format required for analysis using MAPQTL 6.0.
View article: Additional file 15 of High density linkage maps, genetic architecture, and genomic prediction of growth and wood properties in Pinus radiata
Additional file 15 of High density linkage maps, genetic architecture, and genomic prediction of growth and wood properties in Pinus radiata Open
Additional file 15: Table S4. Comprehensive parental linkage maps constructed in the Pinus radiata QTL and FWK pedigrees: A) 268,345; B) 268,405; C) 850,055; D) 850,096.
View article: Additional file 5 of High density linkage maps, genetic architecture, and genomic prediction of growth and wood properties in Pinus radiata
Additional file 5 of High density linkage maps, genetic architecture, and genomic prediction of growth and wood properties in Pinus radiata Open
Additional file 5. 268,345 map file. Plain text file containing the map position (cM) of all loci on the 268,345 linkage map, in the format required for analysis using MAPQTL 6.0.
View article: Additional file 11 of High density linkage maps, genetic architecture, and genomic prediction of growth and wood properties in Pinus radiata
Additional file 11 of High density linkage maps, genetic architecture, and genomic prediction of growth and wood properties in Pinus radiata Open
Additional file 11. 850,096 map file. Plain text file containing the map position (cM) of all loci on the 850,096 linkage map, in the format required for analysis using MAPQTL 6.0.
View article: Additional file 9 of High density linkage maps, genetic architecture, and genomic prediction of growth and wood properties in Pinus radiata
Additional file 9 of High density linkage maps, genetic architecture, and genomic prediction of growth and wood properties in Pinus radiata Open
Additional file 9. All traits QTL pop. Plain text file containing the quantitative trait data of all individuals in the QTL population.
View article: Data for Genetic Variation in Drought-Tolerance Traits and Their Relationships to Growth in Pinus radiata D. Don Under Water Stress
Data for Genetic Variation in Drought-Tolerance Traits and Their Relationships to Growth in Pinus radiata D. Don Under Water Stress Open
Data for Genetic Variation in Drought-Tolerance Traits and Their Relationships to Growth in Pinus radiata D. Don Under Water Stress
View article: Supplemental data
Supplemental data Open
Supplemental data for publication Klapste et al. (2021). The Use of ``Genotyping-by-Sequencing'' to Recover Shared Genealogy in Genetically Diverse Eucalyptus Populations. Forests
View article: Supplemental data
Supplemental data Open
Supplemental data for publication Klapste et al. (2021). The Use of ``Genotyping-by-Sequencing'' to Recover Shared Genealogy in Genetically Diverse Eucalyptus Populations. Forests
View article: The Use of “Genotyping-by-Sequencing” to Recover Shared Genealogy in Genetically Diverse Eucalyptus Populations
The Use of “Genotyping-by-Sequencing” to Recover Shared Genealogy in Genetically Diverse Eucalyptus Populations Open
The recovery of genealogy in both natural and captive populations is critical for any decision in the management of genetic resources. It allows for the estimation of genetic parameters such as heritability and genetic correlations, as wel…
View article: Marker Selection in Multivariate Genomic Prediction Improves Accuracy of Low Heritability Traits
Marker Selection in Multivariate Genomic Prediction Improves Accuracy of Low Heritability Traits Open
Multivariate analysis using mixed models allows for the exploration of genetic correlations between traits. Additionally, the transition to a genomic based approach is simplified by substituting classic pedigrees with a marker-based relati…
View article: Dr.
Dr. Open
The files contain pedigree, phenotypes and genomic data for two populations: Pinus radiata (Pinus) and Eucalyptus nitens (Eucalyptus). Phenotypic data files contain individual identifiers called "ID" which connects phenotypes with pedigree…
View article: Dr.
Dr. Open
The files contain pedigree, phenotypes and genomic data for two populations: Pinus radiata (Pinus) and Eucalyptus nitens (Eucalyptus). Phenotypic data files contain individual identifiers called "ID" which connects phenotypes with pedigree…
View article: Indication of Quantitative Multiple Disease Resistance to Foliar Pathogens in Pinus radiata D.Don in New Zealand
Indication of Quantitative Multiple Disease Resistance to Foliar Pathogens in Pinus radiata D.Don in New Zealand Open
Increasing resistance against foliar diseases is an important goal in the Pinus radiata D.Don breeding program in New Zealand, and screening for resistance has been in place for some time, since the late 1960s. The current study pre…
View article: Effect of trait’s expression level on single-step genomic evaluation of resistance to Dothistroma needle blight
Effect of trait’s expression level on single-step genomic evaluation of resistance to Dothistroma needle blight Open
View article: Genotype-by-environment interaction in coast redwood outside natural distribution - search for environmental cues
Genotype-by-environment interaction in coast redwood outside natural distribution - search for environmental cues Open
View article: Additional file 2 of Genotype-by-environment interaction in coast redwood outside natural distribution - search for environmental cues
Additional file 2 of Genotype-by-environment interaction in coast redwood outside natural distribution - search for environmental cues Open
Additional file 2 Phenotypic data. The Additional file 2 contains all phenotypic data used in this study.
View article: Additional file 1 of Genotype-by-environment interaction in coast redwood outside natural distribution - search for environmental cues
Additional file 1 of Genotype-by-environment interaction in coast redwood outside natural distribution - search for environmental cues Open
Additional file 1 Supplemental tables. The Additional file 1 contains Table S1 summarizing variance components and broad-sense heritability from single site analysis and Table S2 describing climatic and geographical variables related to ea…