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View article: A New Family-Based Approach for Detecting Allele-Specific Expression and for Mapping Possible eQTLs
A New Family-Based Approach for Detecting Allele-Specific Expression and for Mapping Possible eQTLs Open
Allele-specific expression (ASE) reflects the unequal expression of the parental alleles and can imply functional variants in cis-regulatory elements. The conventional ASE detection methods often depend on the presence of heterozygous vari…
View article: A New Family-based Approach for Detecting Allele-Specific Expression and for Mapping Possible eQTLs
A New Family-based Approach for Detecting Allele-Specific Expression and for Mapping Possible eQTLs Open
Allele-specific expression (ASE) reflects the unequal expression of the parental alleles and can imply functional variants in cis-regulatory elements. The conventional ASE detection methods often depend on the presence of heterozygous vari…
View article: Family-based Analysis of Allele-Specific Expression Reveals Mostly Simple, Intermediate-type of Inheritance
Family-based Analysis of Allele-Specific Expression Reveals Mostly Simple, Intermediate-type of Inheritance Open
Background The phenomenon of allele-specific expression (ASE) is widespread in diploids and can be used to infer the activities of variants in cis-regulatory elements. ASE can be detected by counting RNA-seq reads, but this requires varian…
View article: Whole-Genome Sequencing-Based Population Genetic Analysis of Wild and Domestic Rabbit Breeds
Whole-Genome Sequencing-Based Population Genetic Analysis of Wild and Domestic Rabbit Breeds Open
The European rabbit exists in the wild and has several highly bred domesticated forms. There are well-separated wild European rabbit populations, and intensive breeding has resulted in various forms and utilizations. In this work, we aimed…
View article: Creating a novel method for chicken primordial germ cell health monitoring using the fluorescent ubiquitination-based cell cycle indicator reporter system
Creating a novel method for chicken primordial germ cell health monitoring using the fluorescent ubiquitination-based cell cycle indicator reporter system Open
The most current in vitro genetic methods, including gene preservation, gene editing and developmental modelling, require a significant number of healthy cells. In poultry species, primordial germ cells (PGCs) are great candidates for all …
View article: The ELIXIR Biodiversity Community: Understanding short- and long-term changes in biodiversity
The ELIXIR Biodiversity Community: Understanding short- and long-term changes in biodiversity Open
Biodiversity loss is now recognised as one of the major challenges for humankind to address over the next few decades. Unless major actions are taken, the sixth mass extinction will lead to catastrophic effects on the Earth’s biosphere and…
View article: White and other fur colourations and hybridization in golden jackals (Canis aureus) in the Carpathian basin
White and other fur colourations and hybridization in golden jackals (Canis aureus) in the Carpathian basin Open
The golden jackal ( Canis aureus ) is a reoccurring species in the centre of the Carpathian basin, in Hungary. In total, 31 golden jackal tissue samples were collected, from 8 white-coated, 2 black-coated and one mottled animal across Hung…
View article: The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics
The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics Open
A global genome database of all of Earth's species diversity could be a treasure trove of scientific discoveries. However, regardless of the major advances in genome sequencing technologies, only a tiny fraction of species have genomic inf…
View article: European Reference Genome Atlas Community - Phase 1 Members - 2020-2023
European Reference Genome Atlas Community - Phase 1 Members - 2020-2023 Open
This dataset presents a comprehensive list of members registered as part of the European Reference Genome Atlas (ERGA, erga-biodiversity.eu) Community during ERGA Phase 1, which spanned from 2020 to 2023. The dataset includes information o…
View article: European Reference Genome Atlas Community - Phase 1 Members - 2020-2023
European Reference Genome Atlas Community - Phase 1 Members - 2020-2023 Open
This dataset presents a comprehensive list of members registered as part of the European Reference Genome Atlas (ERGA, erga-biodiversity.eu) Community during ERGA Phase 1, which spanned from 2020 to 2023. The dataset includes information o…
View article: European Reference Genome Atlas Community - Phase 1 Members - 2020-2023
European Reference Genome Atlas Community - Phase 1 Members - 2020-2023 Open
This dataset presents a comprehensive list of members registered as part of the European Reference Genome Atlas (ERGA, erga-biodiversity.eu) Community during ERGA Phase 1, which spanned from 2020 to 2023. The dataset includes information o…
View article: The ELIXIR Biodiversity Community: Understanding short- and long-term changes in biodiversity
The ELIXIR Biodiversity Community: Understanding short- and long-term changes in biodiversity Open
Biodiversity loss is now recognised as one of the major challenges for humankind to address over the next few decades. Unless major actions are taken, the sixth mass extinction will lead to catastrophic effects on the Earth’s biosphere and…
View article: Alternatively spliced exon regulates context-dependent MEF2D higher-order assembly during myogenesis
Alternatively spliced exon regulates context-dependent MEF2D higher-order assembly during myogenesis Open
Molecular dynamics data on four MEF2D beta-domain peptide constructs.
View article: Alternatively spliced exon regulates context-dependent MEF2D higher-order assembly during myogenesis
Alternatively spliced exon regulates context-dependent MEF2D higher-order assembly during myogenesis Open
Molecular dynamics data on four MEF2D beta-domain peptide constructs.
View article: An Ultra-Rare Manifestation of an X-Linked Recessive Disorder: Duchenne Muscular Dystrophy in a Female Patient
An Ultra-Rare Manifestation of an X-Linked Recessive Disorder: Duchenne Muscular Dystrophy in a Female Patient Open
Duchenne muscular dystrophy (DMD) is the most common inherited muscle dystrophy. Patients are characterized by muscle weakness, gross motor delay, and elevated serum creatinine kinase (CK) levels. The disease is caused by mutations in the …
View article: Mining the red deer genome (CerEla1.0) to develop X-and Y-chromosome-linked STR markers
Mining the red deer genome (CerEla1.0) to develop X-and Y-chromosome-linked STR markers Open
Microsatellites are widely applied in population and forensic genetics, wildlife studies and parentage testing in animal breeding, among others, and recently, high-throughput sequencing technologies have greatly facilitated the identificat…
View article: Development of Wild Boar Species-Specific DNA Markers for a Potential Quality Control and Traceability Method in Meat Products
Development of Wild Boar Species-Specific DNA Markers for a Potential Quality Control and Traceability Method in Meat Products Open
In the food supply chain, quality control has a very important role in maintaining customer confidence. In the EU, food safety aspects are strictly regulated; however, composition requirements and standard control methods are generally und…
View article: Mapping and DNA sequence characterisation of the Rysto locus conferring extreme virus resistance to potato cultivar ‘White Lady’
Mapping and DNA sequence characterisation of the Rysto locus conferring extreme virus resistance to potato cultivar ‘White Lady’ Open
Virus resistance genes carried by wild plant species are valuable resources for plant breeding. The Rysto gene, conferring a broad spectrum of durable resistance, originated from Solanum stoloniferum and was introgressed into several comme…
View article: ChIPSummitDB: a ChIP-seq-based database of human transcription factor binding sites and the topological arrangements of the proteins bound to them
ChIPSummitDB: a ChIP-seq-based database of human transcription factor binding sites and the topological arrangements of the proteins bound to them Open
ChIP-seq reveals genomic regions where proteins, e.g. transcription factors (TFs) interact with DNA. A substantial fraction of these regions, however, do not contain the cognate binding site for the TF of interest. This phenomenon might be…
View article: Mapping and DNA sequence characterisation of the <i>Ry</i><sub><i>sto</i></sub> locus conferring extreme virus resistance to potato cultivar ‘White Lady’
Mapping and DNA sequence characterisation of the <i>Ry</i><sub><i>sto</i></sub> locus conferring extreme virus resistance to potato cultivar ‘White Lady’ Open
Virus resistance genes carried by wild plant species are valuable resources for plant breeding. The Ry sto gene, conferring a broad spectrum of durable resistance, originated from Solanum stoloniferum and was introgressed into several comm…
View article: ChIPSummitDB: A ChIP-seq-based database of human transcription factor binding sites and the topological arrangements of the proteins bound to them
ChIPSummitDB: A ChIP-seq-based database of human transcription factor binding sites and the topological arrangements of the proteins bound to them Open
ChIP-Seq reveals genomic regions where proteins, e.g. transcription factors (TFs) interact with DNA. A substantial fraction of these regions, however, do not contain the cognate binding site for the TF of interest. This phenomenon might be…
View article: Microsatellite loci in the red deer genome
Microsatellite loci in the red deer genome Open
Position of microsatellite motifs in the red deer genome.
View article: Microsatellite loci in the red deer genome
Microsatellite loci in the red deer genome Open
Position of microsatellite motifs in the red deer genome.
View article: Primers designed for red deer microsatellite loci
Primers designed for red deer microsatellite loci Open
Primers designed for microsatellite loci in the red deer genome