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View article: Disentangling the influence of density dependence, size dependence and environmental effects on fish population dynamics
Disentangling the influence of density dependence, size dependence and environmental effects on fish population dynamics Open
Improving our understanding of the ecological and demographic mechanisms that underlie changes in wild population productivity is critical to support ecosystem‐based management. Yet, population productivity results from a combination of de…
View article: PlanktonFlow : hands-on deep-learning classification of plankton images for biologists
PlanktonFlow : hands-on deep-learning classification of plankton images for biologists Open
High-resolution biodiversity monitoring is crucial to understand the complex dynamics of ecosystems. High throughput image-acquisition devices now provide biologists with a wealth of data, but mainstream, automated image-classification wor…
View article: Invasive alien predators overturn the spatial-scaling laws of biocomplexity: Data and R codes to run analyses and to reproduce figures.
Invasive alien predators overturn the spatial-scaling laws of biocomplexity: Data and R codes to run analyses and to reproduce figures. Open
This archive contains data and R codes to run analyses and to reproduce figures for "Invasive alien predators overturn the spatial-scaling laws of biocomplexity". All R codes are carefully commented. They require that you provide the locat…
View article: PlanktonFlow76 - A curated FlowCam dataset for plankton classification
PlanktonFlow76 - A curated FlowCam dataset for plankton classification Open
This dataset contains a curated collection of FlowCAM images acquired at INRAE UMR DECOD (Rennes, France) during a multi-year mesocosm experiment in controlled aquatic systems. FlowCAM imaging was used to capture planktonic organisms and p…
View article: Combined Effects of Fish, Light and Allochthonous Dissolved Organic Carbon on Interactions Between Green and Brown Food Webs: An Aquatic Mesocosm Experiment
Combined Effects of Fish, Light and Allochthonous Dissolved Organic Carbon on Interactions Between Green and Brown Food Webs: An Aquatic Mesocosm Experiment Open
The classical concepts of top‐down and bottom‐up cascading effects in ecosystems are challenged by the interactions between green and brown food webs. The green food web relies on photosynthesis and the brown food web relies on the mineral…
View article: Habitat structural complexity increases age-class coexistence and population growth rate through relaxed cannibalism in a freshwater fish
Habitat structural complexity increases age-class coexistence and population growth rate through relaxed cannibalism in a freshwater fish Open
Structurally-complex habitats harbour more taxonomically-diverse and more productive communities, a phenomenon generally ascribed to habitat complexity relaxing the strength of inter-specific predation and competition. Here, we extend this…
View article: Data and codes for "Experimental biology of species range dynamics: drivers of survival and dispersal in range-core and range-edge invasive crayfish"
Data and codes for "Experimental biology of species range dynamics: drivers of survival and dispersal in range-core and range-edge invasive crayfish" Open
The zip file contains the data and commented codes (R and JAGS) to reproduce results and figures of the paper.
View article: Data and codes for "Habitat structural complexity increases age-class coexistence and population growth rate through relaxed cannibalism in medaka fish"
Data and codes for "Habitat structural complexity increases age-class coexistence and population growth rate through relaxed cannibalism in medaka fish" Open
The zip file contains readme files, as well as data and codes to reproduce results and figures from the paper.
View article: Dataset Direct effect of artificial warming on communities is stronger than its indirect effect through body mass reduction
Dataset Direct effect of artificial warming on communities is stronger than its indirect effect through body mass reduction Open
This file holds the data and scripts used in the article "Direct effect of artificial warming on communities is stronger than its indirect effect through body mass reduction".Data are available in files whose name begins with the prefix "d…
View article: Data and codes for "Habitat structural complexity increases age-class coexistence and population growth rate in fish"
Data and codes for "Habitat structural complexity increases age-class coexistence and population growth rate in fish" Open
The zip file contains readme files, as well as data and codes to reproduce results from the paper.
View article: Within-species variation in the gut microbiome of medaka (Oryzias latipes) is driven by the interaction of light intensity and genetic background
Within-species variation in the gut microbiome of medaka (Oryzias latipes) is driven by the interaction of light intensity and genetic background Open
Unravelling evolution-by-environment interactions on the gut microbiome is particularly relevant considering the unprecedented level of human-driven disruption of the ecological and evolutionary trajectories of species. Here, we aimed to e…
View article: Habitat structural complexity increases age-class coexistence and population growth rate through relaxed cannibalism in a freshwater fish
Habitat structural complexity increases age-class coexistence and population growth rate through relaxed cannibalism in a freshwater fish Open
Structurally-complex habitats harbour more taxonomically-diverse and more productive communities, a phenomenon generally ascribed to habitat complexity relaxing the strength of inter-specific predation and competition. Here, we extend this…
View article: Sperm competition experiments reveal low prezygotic postmating isolation between parasitic and nonparasitic lamprey ecotypes
Sperm competition experiments reveal low prezygotic postmating isolation between parasitic and nonparasitic lamprey ecotypes Open
The role of postmating sexual selection as a potential reproductive barrier in speciation is not well understood. Here, we studied the effects of sperm competition and cryptic female choice as putative postmating barriers in two lamprey ec…
View article: Within-species variation in the gut microbiome of medaka ( <i>Oryzias latipes</i> ) is driven by the interaction of light intensity and genetic background
Within-species variation in the gut microbiome of medaka ( <i>Oryzias latipes</i> ) is driven by the interaction of light intensity and genetic background Open
Unravelling evolution-by-environment interactions on the gut microbiome is particularly relevant considering the unprecedented level of human-driven disruption of the ecological and evolutionary trajectories of species. Here, we aimed to e…
View article: Dataset Artificial warming decreases heterotroph densities and trophic transfer efficiency
Dataset Artificial warming decreases heterotroph densities and trophic transfer efficiency Open
This file holds the data and scripts used in the article "Artificial warming decreases heterotroph densities and trophic transfer efficiency".Data are available in files whose name begins with the prefix "df". The variables names "date" an…
View article: Dataset Artificial warming decreases heterotroph densities and trophic transfer efficiency
Dataset Artificial warming decreases heterotroph densities and trophic transfer efficiency Open
This file holds the data and scripts used in the article "Artificial warming decreases heterotroph densities and trophic transfer efficiency".Data are available in files whose name begins with the prefix "df". The variables names "date" an…
View article: Dataset Artificial warming decreases heterotroph densities and predator-prey biomass ratio in aquatic systems
Dataset Artificial warming decreases heterotroph densities and predator-prey biomass ratio in aquatic systems Open
This file holds the data and scripts used in the article "Artificial warming decreases heterotroph densities and predator-prey biomass ratio in aquatic systems".Data are available in files whose name begins with the prefix "df". The variab…
View article: Dataset A mesocosm experiment to study the warming and temperature-induced body size reductions effects on freshwater communities
Dataset A mesocosm experiment to study the warming and temperature-induced body size reductions effects on freshwater communities Open
This file holds the data and scripts used in the article "A mesocosm experiment to study the warming and temperature-induced body size reductions effects on freshwater communities".Data are available in files whose name begins with the pre…
View article: Dataset Artificial warming decreases heterotroph densities and predator-prey biomass ratio in aquatic systems
Dataset Artificial warming decreases heterotroph densities and predator-prey biomass ratio in aquatic systems Open
This file holds the data and scripts used in the article "Artificial warming decreases heterotroph densities and predator-prey biomass ratio in aquatic systems".Data are available in files whose name begins with the prefix "df". The variab…
View article: Dataset Artificial warming decreases heterotroph densities and predator-prey biomass ratio in aquatic systems
Dataset Artificial warming decreases heterotroph densities and predator-prey biomass ratio in aquatic systems Open
This file holds the data and scripts used in the article "Artificial warming decreases heterotroph densities and predator-prey biomass ratio in aquatic systems".Data are available in files whose name begins with the prefix "df". The variab…
View article: Dataset Artificial warming decreases heterotroph densities and trophic transfer efficiency in aquatic systems
Dataset Artificial warming decreases heterotroph densities and trophic transfer efficiency in aquatic systems Open
This file holds the data and scripts used in the article "Artificial warming decreases heterotroph densities and trophic transfer efficiency in aquatic systems".Data are available in files whose name begins with the prefix "df". The variab…
View article: Dataset A mesocosm experiment to study the warming and temperature-induced body size reductions effects on freshwater communities
Dataset A mesocosm experiment to study the warming and temperature-induced body size reductions effects on freshwater communities Open
This file holds the data and scripts used in the article "A mesocosm experiment to study the warming and temperature-induced body size reductions effects on freshwater communities".Data are available in files whose name begins with the pre…
View article: Dataset Artificial warming decreases heterotroph densities and trophic transfer efficiency
Dataset Artificial warming decreases heterotroph densities and trophic transfer efficiency Open
This file holds the data and scripts used in the article "Artificial warming decreases heterotroph densities and trophic transfer efficiency".Data are available in files whose name begins with the prefix "df". The variables names "date" an…
View article: Dataset Artificial warming decreases heterotroph densities and trophic transfer efficiency
Dataset Artificial warming decreases heterotroph densities and trophic transfer efficiency Open
This file holds the data and scripts used in the article "Artificial warming decreases heterotroph densities and trophic transfer efficiency".Data are available in files whose name begins with the prefix "df". The variables names "date" an…
View article: Within-species variation in the gut microbiome of medaka (<i>Oryzias latipes</i>) is driven by the interaction of light intensity and genetic background
Within-species variation in the gut microbiome of medaka (<i>Oryzias latipes</i>) is driven by the interaction of light intensity and genetic background Open
Data (ASVs and fish traits) and R codes
View article: Dataset A mesocosm experiment to study the warming and temperature-induced body size reductions effects on freshwater communities
Dataset A mesocosm experiment to study the warming and temperature-induced body size reductions effects on freshwater communities Open
This file holds the data and scripts used in the article "A mesocosm experiment to study the warming and temperature-induced body size reductions effects on freshwater communities".Data are available in files whose name begins with the pre…
View article: Determinants of survival and dispersal along the range expansion of a biological invasion
Determinants of survival and dispersal along the range expansion of a biological invasion Open
Projecting and managing the future response of biological systems to global change requires a mechanistic understanding of how climate and ecology jointly drive species demography and range dynamics. Such knowledge is particularly crucial …
View article: Ecological ramifications of adaptation to size-selective mortality
Ecological ramifications of adaptation to size-selective mortality Open
Size-selective mortality due to harvesting is a threat to numerous exploited species, but how it affects the ecosystem remains largely unexplored. Here, we used a pond mesocosm experiment to assess how evolutionary responses to opposite si…
View article: Is salinity choice related to growth in juvenile eel Anguilla anguilla?
Is salinity choice related to growth in juvenile eel Anguilla anguilla? Open
Microchemical otolith studies show that some individuals never colonize freshwater (FW) habitats and settle in saltwater (SW) as soon as the glass eel stage. In order to check if these divergent migratory behavior could be determined by th…
View article: Comparison of size‐structured and species‐level trophic networks reveals antagonistic effects of temperature on vertical trophic diversity at the population and species level
Comparison of size‐structured and species‐level trophic networks reveals antagonistic effects of temperature on vertical trophic diversity at the population and species level Open
It is predicted that warmer conditions should lead to a loss of trophic levels, as larger bodied consumers, which occupy higher trophic levels, experience higher metabolic costs at high temperature. Yet, it is unclear whether this predicti…