Eric Rasche
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View article: Additional file 5: of Phage spanins: diversity, topological dynamics and gene convergence
Additional file 5: of Phage spanins: diversity, topological dynamics and gene convergence Open
Table S4. A table showing different information about gene arrangement of o-spanin with respect to i-spanin for the embedded, overlapped and separated spanins. (XLSX 124 kb)
View article: Additional file 4: of Phage spanins: diversity, topological dynamics and gene convergence
Additional file 4: of Phage spanins: diversity, topological dynamics and gene convergence Open
Table S3. A table containing data from coiled-coil predictions from the Pepcoil tool for (a) i-spanins, (b) o-spanins and (c) u-spanins. (XLSX 86 kb)
View article: Additional file 3: of Phage spanins: diversity, topological dynamics and gene convergence
Additional file 3: of Phage spanins: diversity, topological dynamics and gene convergence Open
Table S2. A table containing data from secondary structure predictions from the Jpred tool for (a) i-spanins, (b) o-spanins and (c) u-spanins. (XLSX 76 kb)
View article: Additional file 6: of Phage spanins: diversity, topological dynamics and gene convergence
Additional file 6: of Phage spanins: diversity, topological dynamics and gene convergence Open
Table S5. A table showing (a) number of periplasmic cysteines in 2CS (b) position analysis of cysteines in periplasmic domain of the entire spanin complex (c) position analysis of cysteines in periplasmic domain of i-spanins (d) position a…
View article: Additional file 2: of Phage spanins: diversity, topological dynamics and gene convergence
Additional file 2: of Phage spanins: diversity, topological dynamics and gene convergence Open
Table S1. A table containing information about (a) two-component spanins (2CS) and (b) unimolecular spanins identified and analyzed in this study. It also serves as the initial basis for a continuously updated SpaninDataBase (SpaninDB) at …
View article: GMOD/Apollo: Apollo2.0.8-RC3(JB#d3827c)
GMOD/Apollo: Apollo2.0.8-RC3(JB#d3827c) Open
Release Candidate 3 Apollo 2.0.8-RC3 Some of the new features include: added ability to annotate canvas BAM tracks expanded track services support for indexed FASTA as a reference sequence Some important bug fixes: numerous fixes to track …
View article: bgruening/docker-jupyter-notebook: 17.09 release
bgruening/docker-jupyter-notebook: 17.09 release Open
:whale: :microscope: :books: Jupyter running in a docker container. This image can be used to integrate Jupyter into Galaxy
View article: GMOD/Apollo: Apollo2.0.7(JB#9d765ae)
GMOD/Apollo: Apollo2.0.7(JB#9d765ae) Open
Apollo 2.0.7 Official Release Some of the new features include: Support for categories in Track Panel Draggable BAM tracks support color by strand Removal of bower in favor of npm to install JBrowse Add the ability to upload organism seque…
View article: Complete Genome Sequence of Citrobacter freundii Myophage Mijalis
Complete Genome Sequence of Citrobacter freundii Myophage Mijalis Open
Citrobacter freundii is responsible for various opportunistic nosocomial infections. Phage therapies against C. freundii may prove useful in human medicine for treatment of infections caused by the ubiquitous bacteria. Here, we announce th…
View article: GMOD/Apollo: Apollo2.0.6(JB#29795a1bbb)
GMOD/Apollo: Apollo2.0.6(JB#29795a1bbb) Open
Apollo 2.0.6 Official Release Some of the new features include: Numerous UI and performance improvements, including a new icon (button) on the Annotator Panel to toggle the display of JBrowse native tracks. Some important bug fixes: Transc…
View article: GMOD/Apollo: Release Candidate 1 - Apollo2.0.6(JB#9334e76fd)
GMOD/Apollo: Release Candidate 1 - Apollo2.0.6(JB#9334e76fd) Open
Apollo 2.0.6 Release Candidate 1 (testing only) Some of the new features include: Numerous UI and performance improvements including an additional icon to show the native track panel. Some important bug fixes: Transcripts of pseudogenes sh…
View article: Galaxy Planemo 0.35.0
Galaxy Planemo 0.35.0 Open
Command-line utilities to assist in developing tools for the Galaxy Project. http://galaxyproject.org
View article: Apollo: Apollo2.0.4-RC4(JB1.12.2-apollo)
Apollo: Apollo2.0.4-RC4(JB1.12.2-apollo) Open
WARNING: This is a Release Candidate (4) for Apollo 2.0.4. This is NOT the latest stable release for Apollo. Some of the new features include: Allow REMOTE_USER authentication and added pluggable authentication modules Allow sequence downl…
View article: Apollo: Apollo2.0.3(JB1.12.2-apollo)
Apollo: Apollo2.0.3(JB1.12.2-apollo) Open
Official Release Apollo 2.0.3 Some of the new features include: Chado export Ability to change genomic feature type after creating annotation Upgrade to JBrowse version 1.12.2-apollo Ability to annotate multiple organisms at the same time …
View article: Apollo: Apollo2.0.3-RC3(JB1.12.2-apollo)
Apollo: Apollo2.0.3-RC3(JB1.12.2-apollo) Open
Release Candidate 3 - Apollo 2.0.3 Some of the new features include: Chado export Ability to change genomic feature type after creating annotation Upgrade to JBrowse version 1.12.2-apollo Ability to annotation multiple organisms at the sam…
View article: docker-jupyter-notebook 16.01.1
docker-jupyter-notebook 16.01.1 Open
:whale: :microscope: :books: Jupyter running in a docker container. This image can be used to integrate Jupyter into Galaxy
View article: Biopython project update 2016
Biopython project update 2016 Open
The Biopython Project is a long-running distributed collaborative effort, supported by the Open Bioinformatics Foundation, which develops a freely available Python library for biological computation.We present here details of the latest Bi…