Frédéric Herault
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View article: Immune transcriptomic profile in adult female pigs: dominance status has more influence than environmental enrichment
Immune transcriptomic profile in adult female pigs: dominance status has more influence than environmental enrichment Open
Dominance status exerted a more pronounced influence on sows' PBMC transcriptome than did environmental enrichment. In particular, dominance status modulated genes associated with B cells and plasma cell functions. Some of the genes identi…
View article: Data paper: Dataset describing the effects of environmental enrichment and sows’ characteristics on the peripheral blood mononuclear cell transcriptome
Data paper: Dataset describing the effects of environmental enrichment and sows’ characteristics on the peripheral blood mononuclear cell transcriptome Open
International audience
View article: Immune transcriptomic profile in adult female pigs: dominance status has more influence than environmental enrichment
Immune transcriptomic profile in adult female pigs: dominance status has more influence than environmental enrichment Open
Background Assessing animals’ affective states is crucial for evaluating the welfare of farm animals, yet practical tools are lacking. In this study, we tested whether the peripheral blood mononuclear cell (PBMC) transcriptome can be used …
View article: Impact of environmental enrichment on the behaviour and immune cell transcriptome of pregnant sows
Impact of environmental enrichment on the behaviour and immune cell transcriptome of pregnant sows Open
International audience
View article: Restriction site-associated DNA sequencing technologies as an alternative to low-density SNP chips for genomic selection: a simulation study in layer chickens
Restriction site-associated DNA sequencing technologies as an alternative to low-density SNP chips for genomic selection: a simulation study in layer chickens Open
Background To reduce the cost of genomic selection, a low-density (LD) single nucleotide polymorphism (SNP) chip can be used in combination with imputation for genotyping selection candidates instead of using a high-density (HD) SNP chip. …
View article: Identification of polymorphisms in Protein Coding Genes which affect eggshell quality traits in layers
Identification of polymorphisms in Protein Coding Genes which affect eggshell quality traits in layers Open
International audience
View article: Phenotypic and expression QTL integration allows the refinement of loci associated with pig carcass and meat quality traits
Phenotypic and expression QTL integration allows the refinement of loci associated with pig carcass and meat quality traits Open
Background: Many quantitative trait loci (QTLs) affecting pig meat and carcass quality traits have been reported. However, in most cases, the length of these phenotypic QTLs (pQTLs) is large. Hence, the identification of candidate genes an…
View article: Development of a relevant strategy using de novo transcriptome assembly method for transcriptome comparisons between Muscovy and common duck species and their reciprocal inter-specific Mule and Hinny hybrids fed ad libitum and overfed
Development of a relevant strategy using de novo transcriptome assembly method for transcriptome comparisons between Muscovy and common duck species and their reciprocal inter-specific Mule and Hinny hybrids fed ad libitum and overfed Open
Background : Common Pekin and Muscovy ducks and their intergeneric hinny and mule hybrids have different abilities for fatty liver production. RNA-Seq analyses from the liver of these different genetic types fed ad libitum or overfed would…
View article: Development of a relevant strategy using de novo transcriptome assembly method for transcriptome comparisons between Muscovy and common duck species and their reciprocal inter-specific Mule and Hinny hybrids fed ad libitum and overfed
Development of a relevant strategy using de novo transcriptome assembly method for transcriptome comparisons between Muscovy and common duck species and their reciprocal inter-specific Mule and Hinny hybrids fed ad libitum and overfed Open
Background: Common Pekin and Muscovy ducks and their intergeneric hinny and mule hybrids have different abilities for fatty liver production. RNA-Seq analyses from the liver of these different genetic types fed ad libitum or overfed would …
View article: De novo transcriptome assembly and hepatic gene expression analyses in overfed and ad libitum fed Muscovy and Pekin ducks and their reciprocal inter-specific Mule and Hinny hybrids
De novo transcriptome assembly and hepatic gene expression analyses in overfed and ad libitum fed Muscovy and Pekin ducks and their reciprocal inter-specific Mule and Hinny hybrids Open
Background Common Pekin and Muscovy ducks and their intergeneric hinny and mule hybrids have different abilities for fatty liver production. RNA-Seq analyses from the liver of these different genetic types fed ad libitum or overfed would h…
View article: Additional file 6 of Reliability of genomic evaluation for egg quality traits in layers
Additional file 6 of Reliability of genomic evaluation for egg quality traits in layers Open
Additional file 6 Slopes of regression for (G)EBVs in candidate populations with respect to iC traits. Traits: EW: Egg Weight; ESC: Eggshell Colour; ESS: Eggshell Strength; AH: Albumen Height; ESshape: Eggshell shape index. Candidates: C1:…
View article: Additional file 2 of Development of a relevant strategy using de novo transcriptome assembly method for transcriptome comparisons between Muscovy and common duck species and their reciprocal inter-specific mule and hinny hybrids fed ad libitum and overfed
Additional file 2 of Development of a relevant strategy using de novo transcriptome assembly method for transcriptome comparisons between Muscovy and common duck species and their reciprocal inter-specific mule and hinny hybrids fed ad libitum and overfed Open
Additional file 2. GO Biological process enrichments in DEG data.
View article: Additional file 1 of Reliability of genomic evaluation for egg quality traits in layers
Additional file 1 of Reliability of genomic evaluation for egg quality traits in layers Open
Additional file 1 Estimates of (G)EBVs relative accuracy in candidate populations with respect to cC traits. Traits: EW: Egg Weight; ESC: Eggshell Colour; ESS: Eggshell Strength; AH: Albumen Height; ESshape: Eggshell shape index. Candidate…
View article: Additional file 5 of Reliability of genomic evaluation for egg quality traits in layers
Additional file 5 of Reliability of genomic evaluation for egg quality traits in layers Open
Additional file 5 Slopes of regression for (G)EBVs in candidate populations with respect to cC traits. Traits: EW: Egg Weight; ESC: Eggshell Colour; ESS: Eggshell Strength; AH: Albumen Height; ESshape: Eggshell shape index. Candidates: C1:…
View article: Additional file 2 of Reliability of genomic evaluation for egg quality traits in layers
Additional file 2 of Reliability of genomic evaluation for egg quality traits in layers Open
Additional file 2 Estimates of (G)EBVs relative accuracy in candidate populations with respect to iC traits. Traits: EW: Egg Weight; ESC: Eggshell Colour; ESS: Eggshell Strength; AH: Albumen Height; ESshape: Eggshell shape index. Candidate…
View article: Additional file 3 of Reliability of genomic evaluation for egg quality traits in layers
Additional file 3 of Reliability of genomic evaluation for egg quality traits in layers Open
Additional file 3 Bias of (G)EBVs in candidate populations with respect to cC traits. Traits: EW: Egg Weight; ESC: Eggshell Colour; ESS: Eggshell Strength; AH: Albumen Height; ESshape: Eggshell shape index. Candidates: C1: male candidates …
View article: Additional file 4 of Reliability of genomic evaluation for egg quality traits in layers
Additional file 4 of Reliability of genomic evaluation for egg quality traits in layers Open
Additional file 4 Bias of (G)EBVs in candidate populations with respect to iC traits. Traits: EW: Egg Weight; ESC: Eggshell Colour; ESS: Eggshell Strength; AH: Albumen Height; ESshape: Eggshell shape index. Candidates: C1: male candidates …
View article: Relevance of genomic evaluation for egg quality traits in layers
Relevance of genomic evaluation for egg quality traits in layers Open
Background Genomic evaluation, based on thousands of genetic markers, has become the standard evaluation methodology in dairy cattle breeding programs over the past few years. Despite the many differences between dairy cattle breeding and …
View article: RNA-seq analysis of hepatic gene expression of common Pekin, Muscovy, mule and hinny ducks fed ad libitum or overfed
RNA-seq analysis of hepatic gene expression of common Pekin, Muscovy, mule and hinny ducks fed ad libitum or overfed Open
These analyses evidence differences in response to overfeeding between different genetic types and help to better characterize functions involved in hepatic steatosis in ducks.
View article: Additional file 3: of RNA-seq analysis of hepatic gene expression of common Pekin, Muscovy, mule and hinny ducks fed ad libitum or overfed
Additional file 3: of RNA-seq analysis of hepatic gene expression of common Pekin, Muscovy, mule and hinny ducks fed ad libitum or overfed Open
Gene counts. (XLSX 8974 kb)
View article: Additional file 2: of RNA-seq analysis of hepatic gene expression of common Pekin, Muscovy, mule and hinny ducks fed ad libitum or overfed
Additional file 2: of RNA-seq analysis of hepatic gene expression of common Pekin, Muscovy, mule and hinny ducks fed ad libitum or overfed Open
Gene and transcript annotations. (XLSX 1413 kb)