Gianluca De Moro
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View article: metaGOflow: a workflow for the analysis of marine Genomic Observatories shotgun metagenomics data - use case
metaGOflow: a workflow for the analysis of marine Genomic Observatories shotgun metagenomics data - use case Open
Data products returned by metaGOflow (v1.0.0) and packed as a Research Objecte (RO) Crate, when performed with a real-world seawater metagenomic sample (TARA OCEAN, ERR599171). This Zenodo repo accompanies the metaGOflow paper and more abo…
View article: metaGOflow: a workflow for the analysis of marine Genomic Observatories shotgun metagenomics data - use case
metaGOflow: a workflow for the analysis of marine Genomic Observatories shotgun metagenomics data - use case Open
Data products returned by metaGOflow (v1.0.0) and packed as a Research Object (RO) Crate, when performed with: a seawater metagenomic sample (TARA OCEAN, ERR599171) a fish gut sample (ERR4765907) a human gut sample (SRR9654976) This Zenodo…
View article: metaGOflow: a workflow for the analysis of marine Genomic Observatories shotgun metagenomics data - use case
metaGOflow: a workflow for the analysis of marine Genomic Observatories shotgun metagenomics data - use case Open
Data products returned by metaGOflow (v1.0.0) and packed as a Research Object (RO) Crate, when performed with: a seawater metagenomic sample (TARA OCEAN, ERR599171) a fish gut sample (ERR4765907) a human gut sample (SRR9654976) This Zenodo…
View article: metaGOflow: a workflow for the analysis of marine Genomic Observatories shotgun metagenomics data - use case
metaGOflow: a workflow for the analysis of marine Genomic Observatories shotgun metagenomics data - use case Open
Data products returned by metaGOflow (v1.0.0) when performed with real-world samples. In this version we provide the complete data product file (.zip) for a seawater metagenomic sample (TARA OCEAN, ERR599171) and the ro-crate-metadata.json…
View article: metaGOflow: a workflow for the analysis of marine Genomic Observatories shotgun metagenomics data
metaGOflow: a workflow for the analysis of marine Genomic Observatories shotgun metagenomics data Open
Background Genomic Observatories (GOs) are sites of long-term scientific study that undertake regular assessments of the genomic biodiversity. The European Marine Omics Biodiversity Observation Network (EMO BON) is a network of GOs that co…
View article: EOSC-Life Report on the work of the initial demonstrators
EOSC-Life Report on the work of the initial demonstrators Open
This deliverable 3.2 is a report on the demonstrator projects, the eight scientific and technical pilot projects that were selected to provide concrete scientific use-cases and guide and structure the work done in EOSC-Life to build an ope…
View article: ELIXIR-EXCELERATE D6.3: Report describing a set of tools, pipelines and search engine for interrogation of marine metagenomic data.
ELIXIR-EXCELERATE D6.3: Report describing a set of tools, pipelines and search engine for interrogation of marine metagenomic data. Open
● Pipelines expanded to increase scope of analysis, tools updated and tailoring of analysis to meet the demands of the Marine Metagenomics community. ● Analysis pipelines described in the Common Workflow Language (CWL) to enable reproducib…
View article: A haplotype-resolved draft genome of the European sardine ( <i>Sardina pilchardus</i> )
A haplotype-resolved draft genome of the European sardine ( <i>Sardina pilchardus</i> ) Open
Background The European sardine (Sardina pilchardus Walbaum, 1792) is culturally and economically important throughout its distribution. Monitoring studies of sardine populations report an alarming decrease in stocks due to overfishing and…
View article: A haplotype-resolved draft genome of the European sardine (<i>Sardina pilchardus</i>)
A haplotype-resolved draft genome of the European sardine (<i>Sardina pilchardus</i>) Open
Background The European sardine ( Sardina pilchardus Walbaum, 1792) has a high cultural and economic importance throughout its distribution. Monitoring studies of sardine populations report an alarming decrease in stocks due to overfishing…
View article: Additional file 5: of A genome-wide transcriptome map of pistachio (Pistacia vera L.) provides novel insights into salinity-related genes and marker discovery
Additional file 5: of A genome-wide transcriptome map of pistachio (Pistacia vera L.) provides novel insights into salinity-related genes and marker discovery Open
KEGG pathway classification of P. vera transcriptome (XLSX 19Â kb)
View article: Additional file 12: of A genome-wide transcriptome map of pistachio (Pistacia vera L.) provides novel insights into salinity-related genes and marker discovery
Additional file 12: of A genome-wide transcriptome map of pistachio (Pistacia vera L.) provides novel insights into salinity-related genes and marker discovery Open
Primer pairs was used for virtual PCR to amplify SSR repeats. (XLSX 395Â kb)
View article: Additional file 3: of A genome-wide transcriptome map of pistachio (Pistacia vera L.) provides novel insights into salinity-related genes and marker discovery
Additional file 3: of A genome-wide transcriptome map of pistachio (Pistacia vera L.) provides novel insights into salinity-related genes and marker discovery Open
Top BLAST hits from NCBI NR database with corresponding GO terms, Enzyme code and InterPro IDs. (XLSX 5822Â kb)
View article: Additional file 6: of A genome-wide transcriptome map of pistachio (Pistacia vera L.) provides novel insights into salinity-related genes and marker discovery
Additional file 6: of A genome-wide transcriptome map of pistachio (Pistacia vera L.) provides novel insights into salinity-related genes and marker discovery Open
The reconstructed pistachio sequences that shows significant homology with the transcription factors (XLSX 10Â kb)