Grégory Carrier
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View article: Genetic and phenotypic intra-species diversity of alga <i>Tisochrysis lutea</i> reveals original genetic structure and domestication potential
Genetic and phenotypic intra-species diversity of alga <i>Tisochrysis lutea</i> reveals original genetic structure and domestication potential Open
Oceanic phytoplankton species are generally composed of many strains, with intra-species diversity consisting of genetic and phenotypic variability. Despite its importance in ecological and biotechnological contexts, this intra-species div…
View article: Phenotype stability and dynamics of transposable elements in a strain of the microalga Tisochrysis lutea with improved lipid traits
Phenotype stability and dynamics of transposable elements in a strain of the microalga Tisochrysis lutea with improved lipid traits Open
Microalgal domestication is an expanding research field that aims to multiply and accelerate the potential of microalgae for various biotechnological purposes. We investigated the stability of improved lipid traits and genetic changes of a…
View article: Genetic and phenotypic intra-species diversity of alga <i>Tisochrysis lutea</i> reveals original genetic structure and domestication potential
Genetic and phenotypic intra-species diversity of alga <i>Tisochrysis lutea</i> reveals original genetic structure and domestication potential Open
Oceanic phytoplankton species are generally composed of many strains, with intra-species diversity consisting of genetic and phenotypic variability. Despite its importance in ecological and biotechnological contexts, this intra-species div…
View article: The Fucoxanthin Chlorophyll a/c-Binding Protein in Tisochrysis lutea: Influence of Nitrogen and Light on Fucoxanthin and Chlorophyll a/c-Binding Protein Gene Expression and Fucoxanthin Synthesis
The Fucoxanthin Chlorophyll a/c-Binding Protein in Tisochrysis lutea: Influence of Nitrogen and Light on Fucoxanthin and Chlorophyll a/c-Binding Protein Gene Expression and Fucoxanthin Synthesis Open
We observed differences in lhc classification in Chromista. We proposed a classification of the lhcf family with two groups specific to haptophytes, one specific to diatoms, and one specific to seaweeds. Identification and characterization…
View article: Correction for Boukerb et al., “Complete Genome Sequence of <i>Campylobacter armoricus</i> CA639, Which Carries Two Plasmids, Compiled Using Oxford Nanopore and Illumina Sequencing Technologies”
Correction for Boukerb et al., “Complete Genome Sequence of <i>Campylobacter armoricus</i> CA639, Which Carries Two Plasmids, Compiled Using Oxford Nanopore and Illumina Sequencing Technologies” Open
Volume 9, no. 1, e01309-19, 2020, [https://doi.org/10.1128/MRA.01309-19][1]. Page 3: Line 3 of Acknowledgments should read as follows. “… and support services) and Catherine Ragimbeau from the Laboratoire National de Sante for providing Il…
View article: Complete Genome Sequence of <i>Campylobacter armoricus</i> CA639, Which Carries Two Plasmids, Compiled Using Oxford Nanopore and Illumina Sequencing Technologies
Complete Genome Sequence of <i>Campylobacter armoricus</i> CA639, Which Carries Two Plasmids, Compiled Using Oxford Nanopore and Illumina Sequencing Technologies Open
As determined by a hybrid approach combining Oxford Nanopore MinION and Illumina MiniSeq sequence data, Campylobacter armoricus strain CA639 harbored a circular chromosome of 1,688,169 bp with a G+C content of 28.47% and two plasmids named…
View article: Traceability, reproducibility and wiki-exploration for “à-la-carte” reconstructions of genome-scale metabolic models
Traceability, reproducibility and wiki-exploration for “à-la-carte” reconstructions of genome-scale metabolic models Open
Genome-scale metabolic models have become the tool of choice for the global analysis of microorganism metabolism, and their reconstruction has attained high standards of quality and reliability. Improvements in this area have been accompan…
View article: PiRATE: a Pipeline to Retrieve and Annotate Transposable Elements
PiRATE: a Pipeline to Retrieve and Annotate Transposable Elements Open
To date, genome assembly of non-model organisms is usually not at chromosomal level and higly fragmented. This fragmentation is recognized to be, in part, the result of a bad assembly of the transposable elements (TEs) copies, increasing t…
View article: Additional file 2: of A transposable element annotation pipeline and expression analysis reveal potentially active elements in the microalga Tisochrysis lutea
Additional file 2: of A transposable element annotation pipeline and expression analysis reveal potentially active elements in the microalga Tisochrysis lutea Open
Percentage of identity between copies of the expressed TE families. This file lists the percentage of identity between the TE copies of the 17 expressed TE families identified in the genome of Tisochrysis lutea. (XLSX 19 kb)
View article: Additional file 5: of A transposable element annotation pipeline and expression analysis reveal potentially active elements in the microalga Tisochrysis lutea
Additional file 5: of A transposable element annotation pipeline and expression analysis reveal potentially active elements in the microalga Tisochrysis lutea Open
List of non-inventoried sequences added to the databanks used by the pipeline PiRATE. This file lists the non-inventoried sequences added to the databanks used by the pipeline PiRATE, they belong to algae and cyanobacteria. (XLSX 23 kb)
View article: Draft genomes and phenotypic characterization of Tisochrysis lutea strains. Toward the production of domesticated strains with high added value
Draft genomes and phenotypic characterization of Tisochrysis lutea strains. Toward the production of domesticated strains with high added value Open
Tisochrysis lutea is a microalga species currently used in aquaculture as a feed for shellfish, oysters and shrimps. It also has many other potential industrial applications, such as the production of neutral lipids for biofuels or the pro…
View article: Additional file 1: Table S1. of Transcription factors in microalgae: genome-wide prediction and comparative analysis
Additional file 1: Table S1. of Transcription factors in microalgae: genome-wide prediction and comparative analysis Open
Source datasets. Table listing the reference of the genomic data used in this study. (XLSX 11 kb)
View article: Additional file 2: Table S2. of Transcription factors in microalgae: genome-wide prediction and comparative analysis
Additional file 2: Table S2. of Transcription factors in microalgae: genome-wide prediction and comparative analysis Open
Sources for the self-build TF database. Table listing sources for the building of the self-build transcription factor database. (XLSX 11 kb)
View article: High‐affinity nitrate/nitrite transporter genes (<i>Nrt2</i>) in <i>Tisochrysis lutea</i>: identification and expression analyses reveal some interesting specificities of Haptophyta microalgae
High‐affinity nitrate/nitrite transporter genes (<i>Nrt2</i>) in <i>Tisochrysis lutea</i>: identification and expression analyses reveal some interesting specificities of Haptophyta microalgae Open
Microalgae have a diversity of industrial applications such as feed, food ingredients, depuration processes and energy. However, microalgal production costs could be substantially improved by controlling nutrient intake. Accordingly, a bet…