Haiyan Yuan
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View article: Synergistic effects of biochar and phosphate fertilizer on fungal communities and soybean productivity in microplastic-contaminated alkaline soils
Synergistic effects of biochar and phosphate fertilizer on fungal communities and soybean productivity in microplastic-contaminated alkaline soils Open
Alkaline soils suffer from phosphorus (P) bioavailability limitations due to fixation and precipitation, which is further exacerbated by microplastics (MPs) disrupting plant-microbe-soil P dynamics and threatening crop productivity. This s…
View article: Biochar amendment alters rare microbial taxa and enhances wheat growth in alkaline farmland: insights into soil microbiome dynamics
Biochar amendment alters rare microbial taxa and enhances wheat growth in alkaline farmland: insights into soil microbiome dynamics Open
Introduction Biochar is recognized as a promising soil amendment for maintaining soil fertility and improving soil conditions. Alkaline farmland is widely distributed globally. Soil microbial taxa, including rare, intermediate, and abundan…
View article: Tea leaf disease and insect identification based on improved MobileNetV3
Tea leaf disease and insect identification based on improved MobileNetV3 Open
Accurate detection of tea leaf diseases and insects is crucial for their scientific and effective prevention and control, essential for ensuring the quality and yield of tea. Traditional methods for identifying tea leaf diseases and insect…
View article: Harnessing plant-associated microorganisms to alleviate the detrimental effects of environmental abiotic stresses on medicinal plants
Harnessing plant-associated microorganisms to alleviate the detrimental effects of environmental abiotic stresses on medicinal plants Open
Medicinal plants frequently encounter environmental challenges such as drought, salinity, and heavy metal pollution, all of which are aggravated by the ongoing global climate change. Plants can alleviate the negative effects of these stres…
View article: Linking ecological niches to bacterial community structure and assembly in polluted urban aquatic ecosystems
Linking ecological niches to bacterial community structure and assembly in polluted urban aquatic ecosystems Open
Introduction Bacterial communities play crucial roles in the functioning and resilience of aquatic ecosystems, and their responses to water pollution may be assessed from ecological niches. However, our understanding of such response patte…
View article: Effect of different types of biochar on soil properties and functional microbial communities in rhizosphere and bulk soils and their relationship with CH4 and N2O emissions
Effect of different types of biochar on soil properties and functional microbial communities in rhizosphere and bulk soils and their relationship with CH4 and N2O emissions Open
Biochar as an agricultural soil amendment plays vital roles in mediating methane (CH 4 ) and nitrous oxide (N 2 O) emissions in soils. The link between different types of biochar, bulk soil, and rhizosphere microbial communities in relatio…
View article: Isolation and functional analysis of SrMYB1, a direct transcriptional repressor of SrUGT76G1 in Stevia rebaudiana
Isolation and functional analysis of SrMYB1, a direct transcriptional repressor of SrUGT76G1 in Stevia rebaudiana Open
SrUGT76G1, the most well-studied diterpene glycosyltransferase in Stevia rebaudiana, is key to the biosynthesis of economically important steviol glycosides (SGs). However, the molecular regulatory mechanism of SrUGT76G1 has rarely been ex…
View article: IlAP2, an AP2/ERF Superfamily Gene, Mediates Cadmium Tolerance by Interacting with IlMT2a in Iris lactea var. chinensis
IlAP2, an AP2/ERF Superfamily Gene, Mediates Cadmium Tolerance by Interacting with IlMT2a in Iris lactea var. chinensis Open
Cadmium (Cd) stress has a major impact on ecosystems, so it is important to find suitable Cd-tolerant plants while elucidating the responsible molecular mechanism for phytoremediation to manage Cd soil contamination. Iris lactea var. chine…
View article: Phosphorus Fertiliser Application Mitigates the Negative Effects of Microplastic on Soil Microbes and Rice Growth
Phosphorus Fertiliser Application Mitigates the Negative Effects of Microplastic on Soil Microbes and Rice Growth Open
View article: The Response of Soil Bacterial, Fungal, Protistan and Phod-Harboring Microorganisms to Biochar Incorporation in a Three-Year Field Trial
The Response of Soil Bacterial, Fungal, Protistan and Phod-Harboring Microorganisms to Biochar Incorporation in a Three-Year Field Trial Open
View article: PCLassoLog: A protein complex-based, group Lasso-logistic model for cancer classification and risk protein complex discovery
PCLassoLog: A protein complex-based, group Lasso-logistic model for cancer classification and risk protein complex discovery Open
Risk gene identification has attracted much attention in the past two decades. Since most genes need to be translated into proteins and cooperate with other proteins to form protein complexes to carry out cellular functions, which signific…
View article: Seed yield and quality responses of oilseed crops to simulated nitrogen deposition: A meta‐analysis of field studies
Seed yield and quality responses of oilseed crops to simulated nitrogen deposition: A meta‐analysis of field studies Open
Oilseed crops are widely planted and are closely associated with human nutrition and health. Globally, increased nitrogen (N) deposition has a significant impact on agricultural production; however, in‐depth knowledge of oilseed crop yield…
View article: Potassium deficiency inhibits steviol glycosides synthesis by limiting leaf sugar metabolism in stevia (Stevia rebaudiana Bertoni) plants
Potassium deficiency inhibits steviol glycosides synthesis by limiting leaf sugar metabolism in stevia (Stevia rebaudiana Bertoni) plants Open
The steviol glycosides (SGs) in stevia (Stevia rebaudiana Bertoni) leaves are becoming increasingly valuable due to its high sweetness but low calorific value, which is driving the development of stevia commercial cultivation. Optimizing f…
View article: Genome-Wide Identification and Expression Analysis of BBX Transcription Factors in Iris germanica L.
Genome-Wide Identification and Expression Analysis of BBX Transcription Factors in Iris germanica L. Open
The family of B-box (BBX) transcription factors contains one or two B-BOX domains and sometimes also features a highly conserved CCT domain, which plays important roles in plant growth, development and stress response. Nevertheless, no sys…
View article: Transcriptomic Characterization of Nitrate-Enhanced Stevioside Glycoside Synthesis in Stevia (Stevia rebaudiana) Bertoni
Transcriptomic Characterization of Nitrate-Enhanced Stevioside Glycoside Synthesis in Stevia (Stevia rebaudiana) Bertoni Open
Nitrogen forms (nitrate (NO3−) or ammonium (NH4+)) are vital to plant growth and metabolism. In stevia (Stevia rebaudiana), it is important to assess whether nitrogen forms can influence the synthesis of the high-value terpene metabolites-…
View article: The chromosome-level Stevia genome provides insights into steviol glycoside biosynthesis
The chromosome-level Stevia genome provides insights into steviol glycoside biosynthesis Open
Stevia ( Stevia rebaudiana Bertoni) is well known for its very sweet steviol glycosides (SGs) consisting of a common tetracyclic diterpenoid steviol backbone and a variable glycone. Steviol glycosides are 150–300 times sweeter than sucrose…
View article: Frontmatter
Frontmatter Open
Zeitschrift für Kristallographie -New Crystal Structures was founded in 1997 as spin off of Zeitschrift für Kristallographie to meet the high demand to publish results of structure determination.All publications and their submitted CIF-dat…
View article: Selection and validation of appropriate reference genes for RT-qPCR analysis of flowering stages and different genotypes of Iris germanica L
Selection and validation of appropriate reference genes for RT-qPCR analysis of flowering stages and different genotypes of Iris germanica L Open
View article: Screening and Identification of Host Proteins Interacting with Iris lactea var. chinensis Metallothionein IlMT2a by Yeast Two-Hybrid Assay
Screening and Identification of Host Proteins Interacting with Iris lactea var. chinensis Metallothionein IlMT2a by Yeast Two-Hybrid Assay Open
Iris lactea var. chinensis (Fisch.) (I. lactea var. chinensis) is a well-known cadmium (Cd)-tolerant plant and we have previously shown that the metallothionein gene, IlMT2a, of the plant may be playing a key role in conferring the Cd tole…
View article: Full-Length Transcriptome Sequencing and Comparative Transcriptome Analysis to Evaluate Drought and Salt Stress in Iris lactea var. chinensis
Full-Length Transcriptome Sequencing and Comparative Transcriptome Analysis to Evaluate Drought and Salt Stress in Iris lactea var. chinensis Open
Iris lactea var. chinensis (I. lactea var. chinensis) is a perennial herb halophyte with salt and drought tolerance. In this study, full-length transcripts of I. lactea var. chinensis were sequenced using the PacBio RSII sequencing platfor…
View article: Selection and Validation of Appropriate Reference Genes for qRT-PCR Analysis of Flowering Stages and Different Genotypes of Iris Germanica L.
Selection and Validation of Appropriate Reference Genes for qRT-PCR Analysis of Flowering Stages and Different Genotypes of Iris Germanica L. Open
Iris germanica L. is a perennial herbaceous plant that has been widely cultivated worldwide and is popular for its elegant and vibrantly colorful flowers. Selection of appropriate reference genes is the prerequisite for accurate normalizat…
View article: Reference Gene Selection for qRT-PCR Normalization in Iris germanica L.
Reference Gene Selection for qRT-PCR Normalization in Iris germanica L. Open
Quantitative real-time PCR (qPCR) is an effective and widely used method to analyze expression patterns of target genes. Selection of stable reference genes is a prerequisite for accurate normalization of target gene expression by qRT-PCR.…
View article: Accumulation of heavy metals in soil and maize after 17-year pig manure application in Northeast China
Accumulation of heavy metals in soil and maize after 17-year pig manure application in Northeast China Open
Application of composted pig manure (PM) is a traditional practice to improve soil fertility, whereas generally leads to some environmental questions. The effects of PM application on Cd, Cu and Zn accumulation in soil and maize were inves…
View article: The evolutionary history of the sucrose synthase gene family in higher plants
The evolutionary history of the sucrose synthase gene family in higher plants Open
Background Sucrose synthase (SUS) is widely considered a key enzyme participating in sucrose metabolism in higher plants and regarded as a biochemical marker for sink strength in crops. However, despite significant progress in characterizi…
View article: MOESM10 of The evolutionary history of the sucrose synthase gene family in higher plants
MOESM10 of The evolutionary history of the sucrose synthase gene family in higher plants Open
Additional file 10: Table S5. Expression patterns of Arabidopsis SUS genes under hypoxia. The expression data of six SUS genes in Arabidopsis comes from Gene Expression Omnibus (GEO) DataSets (GSE119327). We analyzed the expression of six …
View article: MOESM9 of The evolutionary history of the sucrose synthase gene family in higher plants
MOESM9 of The evolutionary history of the sucrose synthase gene family in higher plants Open
Additional file 9: Table S4. Estimates of Ka/Ks (ω) values of three domains of SUS genes.
View article: MOESM2 of The evolutionary history of the sucrose synthase gene family in higher plants
MOESM2 of The evolutionary history of the sucrose synthase gene family in higher plants Open
Additional file 2: Figure S2. Intron/exon structural organization of angiosperms SUS genes. Blue boxes denote exons within coding regions, and the gray lines connecting them represent introns. Boxes of other colors represent fused exons, a…
View article: Silicon (Si) biochar for the mitigation of arsenic (As) bioaccumulation in spinach ( Spinacia oleracean ) and improvement in the plant growth
Silicon (Si) biochar for the mitigation of arsenic (As) bioaccumulation in spinach ( Spinacia oleracean ) and improvement in the plant growth Open
View article: Root Damage under Alkaline Stress Is Associated with Reactive Oxygen Species Accumulation in Rice (Oryza sativa L.)
Root Damage under Alkaline Stress Is Associated with Reactive Oxygen Species Accumulation in Rice (Oryza sativa L.) Open
Alkaline stress (high pH) severely damages root cells, and consequently, inhibits rice (Oryza sativa L.) seedling growth. In this study, we demonstrate the accumulation of reactive oxygen species (ROS) in root cells under alkaline s…
View article: Plant Regeneration of Iris germanica L. from Shoot Apexes via an Improved Somatic Embryogenesis Protocol
Plant Regeneration of Iris germanica L. from Shoot Apexes via an Improved Somatic Embryogenesis Protocol Open
An improved three-stage protocol for plant regeneration via somatic embryogenesis of the horticulturally important plant Iris germanica L. was developed using shoot apex segments as explants. At the first stage of the experiment, 60% of ca…