Han Ming Gan
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View article: Crowning the King of Fruits: Genomic Evidence of Population Structure and Relatedness in Malaysian Durians
Crowning the King of Fruits: Genomic Evidence of Population Structure and Relatedness in Malaysian Durians Open
Durian ( Durio zibethinus ), often dubbed the King of Fruits, is a high-value tropical crop native to Southeast Asia and widely cultivated in Malaysia. Revered for its unique flavor yet polarizing for its pungent aroma, durian holds signif…
View article: Genome-wide identification of BBX gene family and its function in defense of necrotrophic fungus Alternaria sp. in Chrysanthemum
Genome-wide identification of BBX gene family and its function in defense of necrotrophic fungus Alternaria sp. in Chrysanthemum Open
BBX genes play an important role in plant growth, development, and stress response. However, systematic analysis of BBX gene family regarding resistance to fungal infections has not been previously conducted in Chrysanthemum. In this study…
View article: Microbiome dynamics in tank- and pond-reared Genetically Improved Farmed Tilapia (GIFT)
Microbiome dynamics in tank- and pond-reared Genetically Improved Farmed Tilapia (GIFT) Open
Introduction Tilapia ( Oreochromis spp.) are among the most widely cultivated freshwater finfish species worldwide. The industry increasingly relies on tilapia strains selected for improved growth and other traits, particularly the Genetic…
View article: Complete genome sequence of a novel bipartite begomovirus associated with tomato leaf curl New Delhi disease in golden melon (Cucumis melo) plant leaves
Complete genome sequence of a novel bipartite begomovirus associated with tomato leaf curl New Delhi disease in golden melon (Cucumis melo) plant leaves Open
The tomato leaf curl New Delhi virus (ToLCNDV), also known as Begomovirus solanumdelhiense is a whitefly (Bemisia tabaci)-transmitted bipartite begomovirus that causes significant economic losses exceeding USD $300 million annually. It has…
View article: Dataset for the near-complete hybrid genome assembly of Citrobacter werkmanii UPMLSS01 isolated from Borneo river and insights into its native antibiotic resistance repertoire
Dataset for the near-complete hybrid genome assembly of Citrobacter werkmanii UPMLSS01 isolated from Borneo river and insights into its native antibiotic resistance repertoire Open
The near-complete genome sequence of a Citrobacter werkmanii UPMLSS01, isolated from the Kemena River in Bintulu, Sarawak, Malaysia, is presented. Remarkably, this bacterium exhibited resistance to beta-lactam despite no prior expos…
View article: Development of single nucleotide polymorphisms markers associated with disease resistance towards Pseudomonas koreensis in empurau (Tor tambroides) using T-Plex ARMS PCR assay
Development of single nucleotide polymorphisms markers associated with disease resistance towards Pseudomonas koreensis in empurau (Tor tambroides) using T-Plex ARMS PCR assay Open
View article: Design and optimization of NPK fertilization for ginger (Zingiber officinale) seed rhizome production from tissue-cultured plantlets in soilless culture
Design and optimization of NPK fertilization for ginger (Zingiber officinale) seed rhizome production from tissue-cultured plantlets in soilless culture Open
View article: Mitogenome data of Hylobates abbotti Kloss, 1929 (Abbott’s Gray Gibbon)
Mitogenome data of Hylobates abbotti Kloss, 1929 (Abbott’s Gray Gibbon) Open
View article: Multiplex polymerase chain reaction (PCR) with Nanopore sequencing for sequence-based detection of four tilapia pathogens
Multiplex polymerase chain reaction (PCR) with Nanopore sequencing for sequence-based detection of four tilapia pathogens Open
Background Tilapia aquaculture faces significant threats posed by four prominent pathogens: tilapia lake virus (TiLV), infectious spleen and kidney necrosis virus (ISKNV), Francisella orientalis , and Streptococcus agalactiae . Currently, …
View article: Genomic Characterization of Vibrio spp. in Asian Seabass (Lates calcarifer, Bloch, 1790) Following Field Vaccination Using a Feed-Based Inactivated Vaccine against Vibriosis
Genomic Characterization of Vibrio spp. in Asian Seabass (Lates calcarifer, Bloch, 1790) Following Field Vaccination Using a Feed-Based Inactivated Vaccine against Vibriosis Open
Vibriosis outbreaks pose a significant threat to the productivity of Asian seabass culture, causing substantial losses. Nevertheless, the excessive utilization of antimicrobials exacerbates the issue by fostering the development of antimic…
View article: Real world initiation of newly funded empagliflozin and dulaglutide under special authority for patients with type 2 diabetes in New Zealand
Real world initiation of newly funded empagliflozin and dulaglutide under special authority for patients with type 2 diabetes in New Zealand Open
View article: Whole-genome sequencing of five culturable endophytes isolated from garlic flower stem sap from Upstate New York, USA
Whole-genome sequencing of five culturable endophytes isolated from garlic flower stem sap from Upstate New York, USA Open
We report the whole-genome sequences of five culturable bacterial endophytes isolated from German hardneck garlic sap ( Allium sativum L.). Three isolates were classified under the genus Sphingomonas , while the others were identified as S…
View article: The Complete Mitochondrial Genome of Critically Endangered Painted Terrapin, Batagur borneoensis (Testudines: Geoemydidae)
The Complete Mitochondrial Genome of Critically Endangered Painted Terrapin, Batagur borneoensis (Testudines: Geoemydidae) Open
Characterising mitochondrial genomes is a key to studying evolution in vertebrates including turtles. This study employed Next-Generation Sequencing (NGS) to characterise mitochondrial DNA sequences in Batagur borneoensis (Schlegel & Mulle…
View article: Solid Phase Microextraction (Spme)-Gcms and Whole Gut Metagenome Sequencing of Raw Wild and Captive Bred Malaysian Mahseer Empurau (Tor Tambroides) Fishes
Solid Phase Microextraction (Spme)-Gcms and Whole Gut Metagenome Sequencing of Raw Wild and Captive Bred Malaysian Mahseer Empurau (Tor Tambroides) Fishes Open
View article: The first engkabang jantong (Rubroshorea macrophylla) genome survey data
The first engkabang jantong (Rubroshorea macrophylla) genome survey data Open
The engkabang jantong (Rubroshorea macrophylla) is one of the most indispensable tree species for reforestation due to its high survival rate and rapid growth rate. Due to relatively low genetic interest of this tree species, its ge…
View article: Quorum sensing signals of the grapevine crown gall bacterium, <i>Novosphingobium</i> sp. Rr2-17: use of inducible expression and polymeric resin to sequester acyl-homoserine lactones
Quorum sensing signals of the grapevine crown gall bacterium, <i>Novosphingobium</i> sp. Rr2-17: use of inducible expression and polymeric resin to sequester acyl-homoserine lactones Open
Background A grapevine crown gall tumor strain, Novosphingobium sp. strain Rr2-17 was previously reported to accumulate copious amounts of diverse quorum sensing signals during growth. Genome sequencing identified a single luxI homolog in …
View article: Microbiome Dynamics in Tank- and Pond-Reared GIFT Tilapia
Microbiome Dynamics in Tank- and Pond-Reared GIFT Tilapia Open
Tilapia ( Oreochromis spp.) are among the most widely cultivated freshwater finfish species worldwide. The industry increasingly relies on tilapia strains selected for improved growth and other traits, particularly the Genetically Improved…
View article: The Dark Side of AI Companionship: A Taxonomy of Harmful Algorithmic Behaviors in Human-AI Relationships
The Dark Side of AI Companionship: A Taxonomy of Harmful Algorithmic Behaviors in Human-AI Relationships Open
As conversational AI systems increasingly permeate the socio-emotional realms of human life, they bring both benefits and risks to individuals and society. Despite extensive research on detecting and categorizing harms in AI systems, less …
View article: Accelerated differentiation of neo-W nuclear-encoded mitochondrial genes between two climate-associated bird lineages signals potential co-evolution with mitogenomes
Accelerated differentiation of neo-W nuclear-encoded mitochondrial genes between two climate-associated bird lineages signals potential co-evolution with mitogenomes Open
View article: Complete genome of <i>Allorhizobium</i> (previously <i>Agrobacterium</i> ) <i>vitis</i> strain CG957=AA25 from Afghanistan
Complete genome of <i>Allorhizobium</i> (previously <i>Agrobacterium</i> ) <i>vitis</i> strain CG957=AA25 from Afghanistan Open
Using Nanopore Q20+ sequencing, we report the complete genome of Allorhizobium ( Agrobacterium ) vitis strain CG957=AA25, isolated nearly 40 years ago from a grapevine crown gall in Afghanistan. The assembled genome size is 6 Mb, comprisin…
View article: Complete genome sequencing of <i>Agrobacterium leguminum</i> strain EL101 isolated from <i>Khaya senegalensis</i> tree bark using nanopore technology
Complete genome sequencing of <i>Agrobacterium leguminum</i> strain EL101 isolated from <i>Khaya senegalensis</i> tree bark using nanopore technology Open
We report the complete genome sequence of Agrobacterium leguminum strain EL101, isolated from the tree bark of Khaya senegalensis in Kampar, Perak, Malaysia, obtained using Q20+ Nanopore Sequencing chemistry. The assembled genome has a tot…
View article: First Report of Aeromonas schubertii Infection in Striped Snakehead Channa striata (Bloch, 1793) Fingerlings in Malaysia
First Report of Aeromonas schubertii Infection in Striped Snakehead Channa striata (Bloch, 1793) Fingerlings in Malaysia Open
Striped snakehead fingerlings Channa striata reared in a concrete pond with size 13.5 m3 (3 m ´ 3 m ´ 1.5 m) in a hatchery farm, in Labu, Negeri Sembilan, Malaysia had more than 70% mortality. The pond contained 1500 fingerlings of 5–7 cm …
View article: Whole-genome sequencing of four culturable endophytic bacteria from German hardneck garlic cloves ( <i>Allium sativum</i> L.)
Whole-genome sequencing of four culturable endophytic bacteria from German hardneck garlic cloves ( <i>Allium sativum</i> L.) Open
We present the whole-genome sequence of four bacterial endophytes associated with German hardneck garlic cloves ( Allium sativum L.). Among them, Agrobacterium fabrum and Pantoea agglomerans are associated with plant protection, while Rahn…
View article: Nanopore sequencing for identification and characterization of antimicrobial-resistant Escherichia coli and Salmonella spp. from tilapia and shrimp sold at wet markets in Dhaka, Bangladesh
Nanopore sequencing for identification and characterization of antimicrobial-resistant Escherichia coli and Salmonella spp. from tilapia and shrimp sold at wet markets in Dhaka, Bangladesh Open
Wet markets in low-and middle-income countries are often reported to have inadequate sanitation resulting in fecal contamination of sold produce. Consumption of contaminated wet market-sourced foods has been linked to individual illness an…
View article: Method for detection of pathogenic bacteria from indoor air microbiome samples using high-throughput amplicon sequencing
Method for detection of pathogenic bacteria from indoor air microbiome samples using high-throughput amplicon sequencing Open
The exposure of the air microbiome in indoor air posed a detrimental health effect to the building occupants compared to the outdoor air. Indoor air in hospitals has been identified as a reservoir for various pathogenic microbes. The conve…
View article: Analysis of Supportive Communication Based on TVDM Social Network Information Propagation Dynamics Model: A Case Study of HIV Online Support Groups
Analysis of Supportive Communication Based on TVDM Social Network Information Propagation Dynamics Model: A Case Study of HIV Online Support Groups Open
Utilizing digital health technologies for mental health and medical knowledge during HIV/ADS prevention becomes an emphasis proposed by the Joint United Nations Programme on HIV/AIDS (UNAIDS), and supportive communication within HIV online…
View article: Development of Single Nucleotide Polymorphisms (Snps) Markers Associated with Disease Resistance Towards Pseudomonas Koreensis in Empurau (Tor Tambroides) Using T-Plex Arms Pcr Assay
Development of Single Nucleotide Polymorphisms (Snps) Markers Associated with Disease Resistance Towards Pseudomonas Koreensis in Empurau (Tor Tambroides) Using T-Plex Arms Pcr Assay Open
View article: Bacteria Assemble: Investigating Soil Bacterial Diversity and Interactions in a Sarawakian Oil Palm Plantation for Climate-Resilient Soil Management
Bacteria Assemble: Investigating Soil Bacterial Diversity and Interactions in a Sarawakian Oil Palm Plantation for Climate-Resilient Soil Management Open
Investigating bacterial diversity in the soil of oil palm plantations is crucial for developing effective soil management strategies to mitigate greenhouse gas emissions, thereby addressing climate change challenges. In this study, we anal…
View article: A newly isolated Pseudomonas otitidis phage, vB_PotS-PotUPM1 from tilapia in Malaysia
A newly isolated Pseudomonas otitidis phage, vB_PotS-PotUPM1 from tilapia in Malaysia Open
A new Pseudomonas species, Pseudomonas otitidis was first known as an otic infectious agent in human. The presence of an inherent metallo-β-lactamase gene and its recent emergence in aquaculture underscore its potential zoonotic pathogenic…
View article: A multiplexed RT-PCR assay for nanopore whole genome sequencing of Tilapia lake virus (TiLV)
A multiplexed RT-PCR assay for nanopore whole genome sequencing of Tilapia lake virus (TiLV) Open