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View article: Whole genome sequence analysis of Bacillus amyloliquefaciens strain S2.5 as a potential probiotic for feed supplement in livestock production
Whole genome sequence analysis of Bacillus amyloliquefaciens strain S2.5 as a potential probiotic for feed supplement in livestock production Open
B. amyloliquefaciens S2.5 demonstrated potential probiotic characteristics and its genetic profile in the in vitro experiments. Further in vivo assessments of B. amyloliquefaciens S2.5 on livestock and poultry should be performed to assess…
View article: Compositional shifts in microbial communities in soils supplemented with iron oxide materials and inorganic fertilizer
Compositional shifts in microbial communities in soils supplemented with iron oxide materials and inorganic fertilizer Open
Soil microbial communities play an important role in determining soil ecosystem health. However, the effect of chemicals added to the soil on the function and composition of the soil microbiome is not well known. This study evaluated the e…
View article: Printing Microbial Dark Matter: Using Single Cell Dispensing and Genomics to Investigate the Patescibacteria/Candidate Phyla Radiation
Printing Microbial Dark Matter: Using Single Cell Dispensing and Genomics to Investigate the Patescibacteria/Candidate Phyla Radiation Open
As of today, the majority of environmental microorganisms remain uncultured. They are therefore referred to as “microbial dark matter.” In the recent past, cultivation-independent methods like single-cell genomics (SCG) enabled the discove…
View article: Targeted Cell Sorting Combined With Single Cell Genomics Captures Low Abundant Microbial Dark Matter With Higher Sensitivity Than Metagenomics
Targeted Cell Sorting Combined With Single Cell Genomics Captures Low Abundant Microbial Dark Matter With Higher Sensitivity Than Metagenomics Open
Rare members of environmental microbial communities are often overlooked and unexplored, primarily due to the lack of techniques capable of acquiring their genomes. Chloroflexi belong to one of the most understudied phyla, even though many…
View article: Genome‐inferred spatio‐temporal resolution of an uncultivated Roizmanbacterium reveals its ecological preferences in groundwater
Genome‐inferred spatio‐temporal resolution of an uncultivated Roizmanbacterium reveals its ecological preferences in groundwater Open
Summary Subsurface ecosystems like groundwater harbour diverse microbial communities, including small‐sized, putatively symbiotic organisms of the Candidate Phyla Radiation, yet little is known about their ecological preferences and potent…
View article: Reconstructed genomes of novel Dehalococcoides mccartyi strains from 1,2,3,4-tetrachlorodibenzo-p-dioxin-dechlorinating enrichment cultures reveal divergent reductive dehalogenase gene profiles
Reconstructed genomes of novel Dehalococcoides mccartyi strains from 1,2,3,4-tetrachlorodibenzo-p-dioxin-dechlorinating enrichment cultures reveal divergent reductive dehalogenase gene profiles Open
Polychlorinated dibenzo-p-dioxin (PCDD)-contaminated sites are widespread and associated with a variety of anthropogenic sources. PCDDs and other organohalide pollutants can serve as terminal electron acceptors for anaerobic respiration by…
View article: Reductive dechlorination of polychlorinated dibenzo-p-dioxins by dehalococcoides-enriched cultures from contaminated soils and sediments
Reductive dechlorination of polychlorinated dibenzo-p-dioxins by dehalococcoides-enriched cultures from contaminated soils and sediments Open
Polychlorinated dibenzo-p-dioxins (PCDDs) are pervasive environmental pollutants and resistant in soil and sediment environments. Under anaerobic conditions, PCDDs can undergo reductive dechlorination which produces less chlorinated dibenz…