Ian Harrow
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View article: Maximizing data value for biopharma through FAIR and quality implementation: FAIR plus Q
Maximizing data value for biopharma through FAIR and quality implementation: FAIR plus Q Open
Over recent years, there has been exciting growth in collaboration between academia and industry in the life sciences to make data more Findable, Accessible, Interoperable and Reusable (FAIR) to achieve greater value. Despite considerable …
View article: A Simple Standard for Sharing Ontological Mappings (SSSOM)
A Simple Standard for Sharing Ontological Mappings (SSSOM) Open
Despite progress in the development of standards for describing and exchanging scientific information, the lack of easy-to-use standards for mapping between different representations of the same or similar objects in different databases po…
View article: Ontology matching for the laboratory analytics domain.
Ontology matching for the laboratory analytics domain. Open
The Pistoia Alliance Ontologies Mapping Project has applied the Ontology Matching algorithm, Paxo to the laboratory analytics domain. Nine ontologies relevant to laboratory analytics were selected. Among all possible pair combinations, thi…
View article: Results of the Ontology Alignment Evaluation Initiative 2019
Results of the Ontology Alignment Evaluation Initiative 2019 Open
The Ontology Alignment Evaluation Initiative (OAEI) aims at comparing ontology matching systems on precisely defined test cases. These test cases can be based on ontologies of different levels of complexity (from simple thesauri to express…
View article: Ontology mapping for semantically enabled applications
Ontology mapping for semantically enabled applications Open
In this review, we provide a summary of recent progress in ontology mapping (OM) at a crucial time when biomedical research is under a deluge of an increasing amount and variety of data. This is particularly important for realising the ful…
View article: Implementation and relevance of FAIR data principles in biopharmaceutical R&D
Implementation and relevance of FAIR data principles in biopharmaceutical R&D Open
Biopharmaceutical industry R&D, and indeed other life sciences R&D such as biomedical, environmental, agricultural and food production, is becoming increasingly data-driven and can significantly improve its efficiency and effectiveness by …
View article: Ontology Mapping for the Laboratory Analytics Domain.
Ontology Mapping for the Laboratory Analytics Domain. Open
The Pistoia Alliance Ontologies Mapping Project has applied the Ontology Matching algorithm, Paxo to the laboratory analytics domain. Nine ontologies relevant to laboratory analytics were selected. Among all possible pair combinations, thi…
View article: Progress Towards an Ontology Mapping Service
Progress Towards an Ontology Mapping Service Open
The Pistoia Alliance was established nearly ten years ago to promote innovation by industry through pre-competitive collaboration to reduce the barriers to innovation. The Ontologies Mapping Project [1] was established in 2016 to enable be…
View article: Matching disease and phenotype ontologies in the ontology alignment evaluation initiative
Matching disease and phenotype ontologies in the ontology alignment evaluation initiative Open
View article: Bioexcel Deliverable 5.2 - Revised Business Plan
Bioexcel Deliverable 5.2 - Revised Business Plan Open
This document is a revised business plan, based upon the previous deliverable that was submitted 6 months ago. It presents the current stage of findings and has to be viewed as intermediate step towards the final Governance and Business Pl…
View article: Results of the ontology alignment evaluation initiative 2017
Results of the ontology alignment evaluation initiative 2017 Open
Ontology matching consists of finding correspondences between semantically related entities of different ontologies. The Ontology Alignment Evaluation Initiative (OAEI) aims at comparing ontology matching systems on precisely defined test …
View article: Building biomolecular modelling communities through BioExcel Interest Groups
Building biomolecular modelling communities through BioExcel Interest Groups Open
View article: Bioexcel Deliverable 5.1 - Initial Business Plan
Bioexcel Deliverable 5.1 - Initial Business Plan Open
This document describes scenarios toward sustainability for BioExcel. The described scenarios will be continuously refined during the coming months based on the progress made with our user community. This document should in its current sta…
View article: Bioexcel Deliverable 3.1 - Selection And Establishment Of User Groups
Bioexcel Deliverable 3.1 - Selection And Establishment Of User Groups Open
BioExcel has identified and classified a list of communities of interest and from this a set of initial Interest Groups (IGs) has been selected. This selection is part of an ongoing process of engagement, which is described later in the do…