Ian T. Jones
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View article: Factors associated with diagnostic and treatment intervals in colorectal cancer: A linked data study
Factors associated with diagnostic and treatment intervals in colorectal cancer: A linked data study Open
This research aimed to assess the length of intervals before diagnosis and treatment for colorectal cancer in Australia using linked datasets, and to determine any factors associated with interval length. A colorectal cancer clinical regis…
View article: Initial Assessment of Resectability of Colorectal Cancer Liver Metastases Versus Clinical Outcome
Initial Assessment of Resectability of Colorectal Cancer Liver Metastases Versus Clinical Outcome Open
View article: Some phenomena of the cap-pushing response in honey bees (Apis mellifera spp.).
Some phenomena of the cap-pushing response in honey bees (Apis mellifera spp.). Open
The cap-pushing response (CPR) is a new free-flying technique used to study learning and memory in honey bees. Bees fly to a target where they push a cap to reveal a hidden food source. When combined with traditional odor and color targets…
View article: supplementary Table S1 and S2 from <i>BRAF</i> <i>V600E</i> Mutant Colorectal Cancer Subtypes Based on Gene Expression
supplementary Table S1 and S2 from <i>BRAF</i> <i>V600E</i> Mutant Colorectal Cancer Subtypes Based on Gene Expression Open
Table S1: Definitions of mutation calls used in this study;Table S2: List of genes with non-zero coefficients obtained by the classifier used to categorize gene expression profiles into BM1 and BM2.
View article: supplementary methods and legends from <i>BRAF</i> <i>V600E</i> Mutant Colorectal Cancer Subtypes Based on Gene Expression
supplementary methods and legends from <i>BRAF</i> <i>V600E</i> Mutant Colorectal Cancer Subtypes Based on Gene Expression Open
This file contains the supplementary methods that either describe the methodological part related to supplementary figures or the detailed aspects for the following methods: clustering, pathway analysis, survival, methylation and proteomic…
View article: Data from <i>PIK3CA</i> and <i>PTEN</i> Gene and Exon Mutation-Specific Clinicopathologic and Molecular Associations in Colorectal Cancer
Data from <i>PIK3CA</i> and <i>PTEN</i> Gene and Exon Mutation-Specific Clinicopathologic and Molecular Associations in Colorectal Cancer Open
Purpose:PIK3CA and PTEN mutations are prevalent in colorectal cancer and potential markers of response to mitogen-activated protein/extracellular signal–regulated kinase inhibitors and anti-EGF receptor antibody therap…
View article: supplementary Table S3 from <i>BRAF</i> <i>V600E</i> Mutant Colorectal Cancer Subtypes Based on Gene Expression
supplementary Table S3 from <i>BRAF</i> <i>V600E</i> Mutant Colorectal Cancer Subtypes Based on Gene Expression Open
Association of BM subtyping with known clinical features.
View article: supplementary Figures from <i>BRAF</i> <i>V600E</i> Mutant Colorectal Cancer Subtypes Based on Gene Expression
supplementary Figures from <i>BRAF</i> <i>V600E</i> Mutant Colorectal Cancer Subtypes Based on Gene Expression Open
Figure S1. Principal component analysis and hierarchical clustering of the 218 BRAF mutant patient cohort;Figure S2: Gene-wise and patient-wise biclustering heatmap of the 218 BRAF mutant patient cohort and comparison of BRAF mutant subtyp…
View article: supplementary methods and legends from <i>BRAF</i> <i>V600E</i> Mutant Colorectal Cancer Subtypes Based on Gene Expression
supplementary methods and legends from <i>BRAF</i> <i>V600E</i> Mutant Colorectal Cancer Subtypes Based on Gene Expression Open
This file contains the supplementary methods that either describe the methodological part related to supplementary figures or the detailed aspects for the following methods: clustering, pathway analysis, survival, methylation and proteomic…
View article: supplementary Table S3 from <i>BRAF</i> <i>V600E</i> Mutant Colorectal Cancer Subtypes Based on Gene Expression
supplementary Table S3 from <i>BRAF</i> <i>V600E</i> Mutant Colorectal Cancer Subtypes Based on Gene Expression Open
Association of BM subtyping with known clinical features.
View article: supplementary Table S4 from <i>BRAF</i> <i>V600E</i> Mutant Colorectal Cancer Subtypes Based on Gene Expression
supplementary Table S4 from <i>BRAF</i> <i>V600E</i> Mutant Colorectal Cancer Subtypes Based on Gene Expression Open
Genes that characterize the difference between BM1 and BM2 (BM subtypes), MSI and MSS (MSI status), and males and females (gender).
View article: Data from <i>PIK3CA</i> and <i>PTEN</i> Gene and Exon Mutation-Specific Clinicopathologic and Molecular Associations in Colorectal Cancer
Data from <i>PIK3CA</i> and <i>PTEN</i> Gene and Exon Mutation-Specific Clinicopathologic and Molecular Associations in Colorectal Cancer Open
Purpose:PIK3CA and PTEN mutations are prevalent in colorectal cancer and potential markers of response to mitogen-activated protein/extracellular signal–regulated kinase inhibitors and anti-EGF receptor antibody therap…
View article: supplementary Table S6 from <i>BRAF</i> <i>V600E</i> Mutant Colorectal Cancer Subtypes Based on Gene Expression
supplementary Table S6 from <i>BRAF</i> <i>V600E</i> Mutant Colorectal Cancer Subtypes Based on Gene Expression Open
Results of colorectal cell lines classification into BM1 and BM2.
View article: Data from <i>BRAF</i> <i>V600E</i> Mutant Colorectal Cancer Subtypes Based on Gene Expression
Data from <i>BRAF</i> <i>V600E</i> Mutant Colorectal Cancer Subtypes Based on Gene Expression Open
Purpose: Mutation of BRAF at the valine 600 residue occurs in approximately 10% of colorectal cancers, a group with particularly poor prognosis. The response of BRAF mutant colorectal cancer to recent targeted strategi…
View article: supplementary Table S6 from <i>BRAF</i> <i>V600E</i> Mutant Colorectal Cancer Subtypes Based on Gene Expression
supplementary Table S6 from <i>BRAF</i> <i>V600E</i> Mutant Colorectal Cancer Subtypes Based on Gene Expression Open
Results of colorectal cell lines classification into BM1 and BM2.
View article: Supplementary Data from DNA Copy-Number Alterations Underlie Gene Expression Differences between Microsatellite Stable and Unstable Colorectal Cancers
Supplementary Data from DNA Copy-Number Alterations Underlie Gene Expression Differences between Microsatellite Stable and Unstable Colorectal Cancers Open
Supplementary Data from DNA Copy-Number Alterations Underlie Gene Expression Differences between Microsatellite Stable and Unstable Colorectal Cancers
View article: supplementary Table S1 and S2 from <i>BRAF</i> <i>V600E</i> Mutant Colorectal Cancer Subtypes Based on Gene Expression
supplementary Table S1 and S2 from <i>BRAF</i> <i>V600E</i> Mutant Colorectal Cancer Subtypes Based on Gene Expression Open
Table S1: Definitions of mutation calls used in this study;Table S2: List of genes with non-zero coefficients obtained by the classifier used to categorize gene expression profiles into BM1 and BM2.
View article: supplementary Table S4 from <i>BRAF</i> <i>V600E</i> Mutant Colorectal Cancer Subtypes Based on Gene Expression
supplementary Table S4 from <i>BRAF</i> <i>V600E</i> Mutant Colorectal Cancer Subtypes Based on Gene Expression Open
Genes that characterize the difference between BM1 and BM2 (BM subtypes), MSI and MSS (MSI status), and males and females (gender).
View article: supplementary Table S5 from <i>BRAF</i> <i>V600E</i> Mutant Colorectal Cancer Subtypes Based on Gene Expression
supplementary Table S5 from <i>BRAF</i> <i>V600E</i> Mutant Colorectal Cancer Subtypes Based on Gene Expression Open
Analysis of GO processes enriched in several mTOR signatures.
View article: Data from <i>BRAF</i> <i>V600E</i> Mutant Colorectal Cancer Subtypes Based on Gene Expression
Data from <i>BRAF</i> <i>V600E</i> Mutant Colorectal Cancer Subtypes Based on Gene Expression Open
Purpose: Mutation of BRAF at the valine 600 residue occurs in approximately 10% of colorectal cancers, a group with particularly poor prognosis. The response of BRAF mutant colorectal cancer to recent targeted strategi…
View article: supplementary Table S7 from <i>BRAF</i> <i>V600E</i> Mutant Colorectal Cancer Subtypes Based on Gene Expression
supplementary Table S7 from <i>BRAF</i> <i>V600E</i> Mutant Colorectal Cancer Subtypes Based on Gene Expression Open
Results of differential drug responses of BM1 and BM2 classified colorectal cell lines.
View article: supplementary Figures from <i>BRAF</i> <i>V600E</i> Mutant Colorectal Cancer Subtypes Based on Gene Expression
supplementary Figures from <i>BRAF</i> <i>V600E</i> Mutant Colorectal Cancer Subtypes Based on Gene Expression Open
Figure S1. Principal component analysis and hierarchical clustering of the 218 BRAF mutant patient cohort;Figure S2: Gene-wise and patient-wise biclustering heatmap of the 218 BRAF mutant patient cohort and comparison of BRAF mutant subtyp…
View article: Data from DNA Copy-Number Alterations Underlie Gene Expression Differences between Microsatellite Stable and Unstable Colorectal Cancers
Data from DNA Copy-Number Alterations Underlie Gene Expression Differences between Microsatellite Stable and Unstable Colorectal Cancers Open
Purpose: About 15% of colorectal cancers harbor microsatellite instability (MSI). MSI-associated gene expression changes have been identified in colorectal cancers, but little overlap exists between signatures hindering an assessmen…
View article: Supplementary Data from DNA Copy-Number Alterations Underlie Gene Expression Differences between Microsatellite Stable and Unstable Colorectal Cancers
Supplementary Data from DNA Copy-Number Alterations Underlie Gene Expression Differences between Microsatellite Stable and Unstable Colorectal Cancers Open
Supplementary Data from DNA Copy-Number Alterations Underlie Gene Expression Differences between Microsatellite Stable and Unstable Colorectal Cancers
View article: Supplementary Tables 1 - 17, Figures 1 - 3 from <i>PIK3CA</i> and <i>PTEN</i> Gene and Exon Mutation-Specific Clinicopathologic and Molecular Associations in Colorectal Cancer
Supplementary Tables 1 - 17, Figures 1 - 3 from <i>PIK3CA</i> and <i>PTEN</i> Gene and Exon Mutation-Specific Clinicopathologic and Molecular Associations in Colorectal Cancer Open
PDF file - 716K, Supplementary Table 1. Somatic PIK3CA exon 9 and 20 mutations detected in 1,093 patients with sporadic CRC. Supplementary Table 2. Somatic PTEN exon 3 to 8 mutations detected in 744 patients with sporadic CRC. Supplementar…
View article: supplementary Table S7 from <i>BRAF</i> <i>V600E</i> Mutant Colorectal Cancer Subtypes Based on Gene Expression
supplementary Table S7 from <i>BRAF</i> <i>V600E</i> Mutant Colorectal Cancer Subtypes Based on Gene Expression Open
Results of differential drug responses of BM1 and BM2 classified colorectal cell lines.
View article: Supplementary Tables 1 - 17, Figures 1 - 3 from <i>PIK3CA</i> and <i>PTEN</i> Gene and Exon Mutation-Specific Clinicopathologic and Molecular Associations in Colorectal Cancer
Supplementary Tables 1 - 17, Figures 1 - 3 from <i>PIK3CA</i> and <i>PTEN</i> Gene and Exon Mutation-Specific Clinicopathologic and Molecular Associations in Colorectal Cancer Open
PDF file - 716K, Supplementary Table 1. Somatic PIK3CA exon 9 and 20 mutations detected in 1,093 patients with sporadic CRC. Supplementary Table 2. Somatic PTEN exon 3 to 8 mutations detected in 744 patients with sporadic CRC. Supplementar…
View article: supplementary Table S5 from <i>BRAF</i> <i>V600E</i> Mutant Colorectal Cancer Subtypes Based on Gene Expression
supplementary Table S5 from <i>BRAF</i> <i>V600E</i> Mutant Colorectal Cancer Subtypes Based on Gene Expression Open
Analysis of GO processes enriched in several mTOR signatures.
View article: Data from DNA Copy-Number Alterations Underlie Gene Expression Differences between Microsatellite Stable and Unstable Colorectal Cancers
Data from DNA Copy-Number Alterations Underlie Gene Expression Differences between Microsatellite Stable and Unstable Colorectal Cancers Open
Purpose: About 15% of colorectal cancers harbor microsatellite instability (MSI). MSI-associated gene expression changes have been identified in colorectal cancers, but little overlap exists between signatures hindering an assessmen…
View article: Overall survival comparing laparoscopic to open surgery for right‐sided colon cancer: propensity score inverse probability weighting population study
Overall survival comparing laparoscopic to open surgery for right‐sided colon cancer: propensity score inverse probability weighting population study Open
Background This retrospective cohort study reports on overall survival and short‐term complications, comparing laparoscopic to open resection for right‐sided colon cancers. It is one of the largest studies in the field with generalizable p…