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View article: Tara Pacific CDIV ITS2 Symbiodiniaceae data release V2
Tara Pacific CDIV ITS2 Symbiodiniaceae data release V2 Open
This data is the result of the primary analysis of the ITS2 sequencing data associated with the Coral Diversity dataset collected from all islands as part of the Tara Pacific expedition. A full README is contained within the data upload. I…
Morphological traits and machine learning for genetic lineage prediction of two reef-building corals Open
Integrating multiple lines of evidence that support molecular taxonomy analysis has proven to be a robust method for species delimitation in scleractinian corals. However, morphology often conflicts with genetic approaches due to high phen…
View article: rDNA 18S V9 ASV tables (SWARM) for Tara Pacific Expedition
rDNA 18S V9 ASV tables (SWARM) for Tara Pacific Expedition Open
This data is the result of the second analysis of the V9 18S rDNA metabarcoding sequencing data from the Tara Pacific expedition. The analysis was conducted using cutadapt, vsearch, swarm and lulu. Please refer to the readme file for more …
Investigations into the relationship between pelagic fish and dolphin distributions off the west coast of Scotland Open
No abstracts are to be cited without prior reference to the author.Surveys of the main commercially exploited fish stocks are carried out on a regular basis in European waters, and provide promising platforms from which to conduct passive …
A dual frequency algorithm for the identification of sandeel school echotraces Open
No abstracts are to be cited without prior reference to the author.Sandeels are not only targets of a significant industrial fishery, but are also considered to be a vital trophic component of the North Sea ecosystem. At present there is n…
Editorial: Innovative approaches to coral reef science by early career researchers Open
EDITORIAL article Front. Mar. Sci., 05 December 2023Sec. Coral Reef Research Volume 10 - 2023 | https://doi.org/10.3389/fmars.2023.1322657
View article: 27 MAGs from the Family of Endozoicomonadaceae derived from Tara Pacific Metagenomes
27 MAGs from the Family of Endozoicomonadaceae derived from Tara Pacific Metagenomes Open
This dataset contains 27 MAGs from the family of Endozoicomonadaceae generated from a subset of Tara Pacific metagenomes. Contextual information of the MAGs can be found in the associated publication: Ecology of Endozoicomonadaceae in thre…
View article: 27 MAGs from the Family of Endozoicomonadaceae derived from Tara Pacific Metagenomes
27 MAGs from the Family of Endozoicomonadaceae derived from Tara Pacific Metagenomes Open
This dataset contains 27 MAGs from the family of Endozoicomonadaceae generated from a subset of Tara Pacific metagenomes. Contextual information of the MAGs can be found in the associated publication: Ecology of Endozoicomonadaceae in thre…
Disparate patterns of genetic divergence in three widespread corals across a pan-Pacific environmental gradient highlights species-specific adaptation trajectories Open
Tropical coral reefs are among the worst affected ecosystems by climate change with predictions ranging between a 70-90% loss of reefs in the coming decades. Effective conservation strategies that maximize ecosystem resilience, and potenti…
Resources from: Disparate patterns of genetic divergence in three widespread corals across a pan-pacific environmental gradient highlights species-specific adaptation trajectories Open
The following files are contained in this repository: README.Hume_et_al_2022.zenodov2.txt - This document. Voolstra_etal_23.zenodov2.pdf - Contains the scripts, or locations of the scripts, used to conduct the data analyses detailed in the…
Resources from: Disparate patterns of genetic divergence in three widespread corals across a pan-pacific environmental gradient highlights species-specific adaptation trajectories Open
The following files are contained in this repository: README.Hume_et_al_2022.zenodov2.txt - This document. scripts.Hume_et_al_2022.zenodov2.pdf - Contains the scripts, or locations of the scripts, used to conduct the data analyses detailed…
Resources from: Disparate patterns of genetic divergence in three widespread corals across a pan-pacific environmental gradient highlights species-specific adaptation trajectories Open
The following files are contained in this repository: README.Hume_et_al_2022.zenodov4.txt - This document. scripts.Hume_et_al_2022.zenodov4.pdf - Contains the scripts, or locations of the scripts, used to conduct the data analyses detailed…
Resources from: Disparate patterns of genetic divergence in three widespread corals across a pan-pacific environmental gradient highlights species-specific adaptation trajectories Open
The following files are contained in this repository: README.Hume_et_al_2022.zenodov2.txt - This document. scripts.Hume_et_al_2022.zenodov2.pdf - Contains the scripts, or locations of the scripts, used to conduct the data analyses detailed…
Resources from: Disparate patterns of genetic divergence in three widespread corals across a pan-pacific environmental gradient highlights species-specific adaptation trajectories Open
The following files are contained in this repository: README.Hume_et_al_2022.zenodov4.txt - This document. scripts.Hume_et_al_2022.zenodov4.pdf - Contains the scripts, or locations of the scripts, used to conduct the data analyses detailed…
Resources from: Disparate patterns of genetic divergence in three widespread corals across a pan-pacific environmental gradient highlights species-specific adaptation trajectories Open
This deposition contains scripts and datasets used in the associated manuscript: Disparate patterns of genetic divergence in three widespread corals across a pan-pacific environmental gradient highlights species-specific adaptation traject…
Tara Pacific 16S rRNA data analysis release Open
This data is the result of the primary analysis of the 16S rRNA gene sequencing data collected from all islands as part of the Tara Pacific expedition. The analysis was conducted using cutadapt/snakemake/dada2 and usearch. A full README is…
Tara Pacific 16S rRNA data analysis release Open
This data is the result of the primary analysis of the 16S rRNA gene sequencing data collected from all islands as part of the Tara Pacific expedition. The analysis was conducted using cutadapt/snakemake/dada2 and usearch. A full README is…
Pervasive tandem duplications and convergent evolution shape coral genomes Open
Over the last decade, several coral genomes have been sequenced allowing a better understanding of these symbiotic organisms threatened by climate change. Scleractinian corals are reef builders and are central to these ecosystems, providin…
TARA Pacific Bleaching Prevalence of Sampling Sites (Islands) Open
Summary To obtain a proxy for the stress level of collected corals, we checked for previous occurrences of bleaching events at sampled reef sites by matching island GPS coordinates to the Reef Check dataset (reefcheck.org) obtained from Su…
TARA Pacific Bleaching Prevalence of Sampling Sites (Islands) Open
Summary To obtain a proxy for the stress level of collected corals, we checked for previous occurrences of bleaching events at sampled reef sites by matching island GPS coordinates to the Reef Check dataset (reefcheck.org) obtained from Su…
Elevated temperature and carbon dioxide levels alter growth rates and shell composition in the fluted giant clam, Tridacna squamosa Open
We investigated the effects of 60-d exposure to end-of-the-century projections for seawater temperature (+3 °C) and pCO2 (+500 µatm) on growth, mineralogy, and organic content of shells and scutes in juvenile Tridacna squamosa clams. The p…
Elevated temperature and carbon dioxide levels alter growth rates and shell composition in the fluted giant clam, Tridacna squamosa Open
We investigated the effects of 60-d exposure to end-of-the-century projections for seawater temperature (+3 °C) and pCO2 (+500 µatm) on growth, mineralogy, and organic content of shells and scutes in juvenile Tridacna squamosa clams. The p…