James McManus
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View article: A niche for diverse cable bacteria in continental margin sediments overlain by oxygen-deficient waters
A niche for diverse cable bacteria in continental margin sediments overlain by oxygen-deficient waters Open
Since the discovery of cable bacteria more than a decade ago, these multicellular, filamentous sulfur-oxidizing bacteria have been found in a range of sedimentary environments. However, their abundance, diversity, and activity in continent…
View article: Abyssal seafloor as a key driver of ocean trace-metal biogeochemical cycles
Abyssal seafloor as a key driver of ocean trace-metal biogeochemical cycles Open
Trace elements and isotopes (TEIs) are important to marine life and are essential tools for studying ocean processes 1 . Two different frameworks have arisen regarding marine TEI cycling: reversible scavenging favours water-column control …
View article: Supplementary material to "A niche for diverse cable bacteria in continental margin sediments overlain by oxygen-deficient waters"
Supplementary material to "A niche for diverse cable bacteria in continental margin sediments overlain by oxygen-deficient waters" Open
View article: A niche for diverse cable bacteria in continental margin sediments overlain by oxygen-deficient waters
A niche for diverse cable bacteria in continental margin sediments overlain by oxygen-deficient waters Open
Since the discovery of cable bacteria more than a decade ago, these multi-cellular, filamentous sulfur-oxidizing bacteria have been found in a range of sedimentary environments. However, their abundance, diversity and activity in continent…
View article: Nickel's behaviour in marine sediments under aerobic to anaerobic diagenetic conditions
Nickel's behaviour in marine sediments under aerobic to anaerobic diagenetic conditions Open
View article: IODP Expedition 392, Hole U1581B - Well Logging Data
IODP Expedition 392, Hole U1581B - Well Logging Data Open
Logging data are measurements of physical properties of the formation surrounding a borehole, acquired in situ after completion of coring (wireline logging) or during drilling (Logging-While-Drilling, LWD). The range of data (resistivity, …
View article: IODP Expedition 392, Hole U1579D - Well Logging Data
IODP Expedition 392, Hole U1579D - Well Logging Data Open
Logging data are measurements of physical properties of the formation surrounding a borehole, acquired in situ after completion of coring (wireline logging) or during drilling (Logging-While-Drilling, LWD). The range of data (resistivity, …
View article: IODP Expedition 392, Hole U1579D - Well Logging Data
IODP Expedition 392, Hole U1579D - Well Logging Data Open
Logging data are measurements of physical properties of the formation surrounding a borehole, acquired in situ after completion of coring (wireline logging) or during drilling (Logging-While-Drilling, LWD). The range of data (resistivity, …
View article: IODP Expedition 392, Hole U1581B - Well Logging Data
IODP Expedition 392, Hole U1581B - Well Logging Data Open
Logging data are measurements of physical properties of the formation surrounding a borehole, acquired in situ after completion of coring (wireline logging) or during drilling (Logging-While-Drilling, LWD). The range of data (resistivity, …
View article: IODP Expedition 392, Hole U1580A - Well Logging Data
IODP Expedition 392, Hole U1580A - Well Logging Data Open
Logging data are measurements of physical properties of the formation surrounding a borehole, acquired in situ after completion of coring (wireline logging) or during drilling (Logging-While-Drilling, LWD). The range of data (resistivity, …
View article: IODP Expedition 392, Hole U1580A - Well Logging Data
IODP Expedition 392, Hole U1580A - Well Logging Data Open
Logging data are measurements of physical properties of the formation surrounding a borehole, acquired in situ after completion of coring (wireline logging) or during drilling (Logging-While-Drilling, LWD). The range of data (resistivity, …
View article: Production and preservation of organic carbon in sub-seafloor tephra layers
Production and preservation of organic carbon in sub-seafloor tephra layers Open
The deposition of volcanic ash into the ocean initiates a range of chemical and biological reactions. During diagenesis, these reactions may enhance the preservation of organic carbon (OC) in marine sediments, which ultimately promotes CO2…
View article: COBRA Master Class: Providing deep-sea expedition leadership training to accelerate early career advancement
COBRA Master Class: Providing deep-sea expedition leadership training to accelerate early career advancement Open
Leading deep-sea research expeditions requires a breadth of training and experience, and the opportunities for Early Career Researchers (ECRs) to obtain focused mentorship on expedition leadership are scarce. To address the need for leader…
View article: IODP Expedition 392 Gas safety report
IODP Expedition 392 Gas safety report Open
This composite report returns data from two different gas chromatograph configurations (GC3 and NGA). Each row combines data from several measurements made on the same sample at the same time for a particular headspace or vacutainer sample…
View article: IODP Expedition 392 Section summary
IODP Expedition 392 Section summary Open
Report includes data for individual core sections: coring/drilling depths and recovery, database identifiers for the whole section and section halves, and number of samples taken from the section before and after splitting.
View article: IODP Expedition 392 P-wave velocity logger (whole round)
IODP Expedition 392 P-wave velocity logger (whole round) Open
P-wave velocity data were measured on whole-round sections on the Whole-Round Multisensor Logger (WRMSL) using pairs of piezoelectric transducers mounted on a caliper system. Measurements may be affected by degassing of pore fluid and micr…
View article: IODP Expedition 392 Towed magnetometer
IODP Expedition 392 Towed magnetometer Open
Seafloor magnetometer data were measured using a Marine Magnetics 1000 m SeaSpy towed magnetometer. Raw log and data files are presented by expedition.
View article: IODP Expedition 392 Magnetic susceptibility (point or contact system)
IODP Expedition 392 Magnetic susceptibility (point or contact system) Open
Magnetic susceptibility was measured on section halves on the Section Half Multisensor Logger (SHMSL) using a Bartington MS2 meter and either a MS2E or MS2K probe. Because all JRSO cores meet minimum size requirements for these two probes,…
View article: IODP Expedition 392 Whole-round core section images
IODP Expedition 392 Whole-round core section images Open
Images of the outside of hard rock whole-round sections were acquired using a linescan imager (Section Half Imaging Logger [SHIL]) and a special holder that allows each 90 degree segment of the outer surface to be positioned properly. The …
View article: IODP Expedition 392 Closeup images
IODP Expedition 392 Closeup images Open
Close-up images taken by digital cameras as requested by the science party, typically when the section-half image is not sufficient. Close-up photographs of the areas of interest may be taken from whole-round sections, pieces, or section h…
View article: IODP Expedition 392 Section-half images
IODP Expedition 392 Section-half images Open
Digital section images were taken of the flat face of split cores on the Section Half Imaging Logger (SHIL) using a linescan camera at a resolution of 20 lines/mm (50 micron pixels). Cores were imaged as soon as possible after splitting to…
View article: IODP Expedition 392 Core drilling summary
IODP Expedition 392 Core drilling summary Open
Report includes detailed drilling data for each core: pump(s) used, mud pumped, strokes, shear pins/pressure, bit size/rotation, weight on bit, top drive torque, rate of penetration, core jams, winch and wirelines, core catcher/shoe and ba…
View article: IODP Expedition 392 ICP-AES elemental analysis (solids)
IODP Expedition 392 ICP-AES elemental analysis (solids) Open
Elemental contents in hard rock and sediment samples was measured by inductively coupled plasma - atomic emission spectrocopy (ICP-AES). Data are presented by element-wavelength pair (e.g., more than one calcium line may be reported). Elem…
View article: IODP Expedition 392 Moisture and Density
IODP Expedition 392 Moisture and Density Open
Moisture and density (MAD) data were acquired on ~10 mL sediment or rock samples by measuring three out of four material parameters: wet (saturated) mass, wet volume, dry mass, and/or dry volume after 24 h drying in a convection oven at 10…
View article: IODP Expedition 392 Hole summary
IODP Expedition 392 Hole summary Open
Report lists hole data: location, water depth, drilling, coring system, and core recovery.
View article: IODP Expedition 392 Inorganic carbon (coulometer)
IODP Expedition 392 Inorganic carbon (coulometer) Open
Inorganic carbon (carbonate) is determined by coulometry, which uses a photodetection cell to measure carbon dioxide evolved during sample acidification. Report includes percent inorganic carbon and calcium carbonate.
View article: IODP Expedition 392 Magnetic susceptibility (whole round)
IODP Expedition 392 Magnetic susceptibility (whole round) Open
Magnetic susceptibility was measured on whole-round sections (and rarely section halves) on the Whole-Round Multisensor Logger (WRMSL) and/or Special Task Multisensor Logger (STMSL) using a Bartington MS2 meter and a 90 mm or 80 mm MS2C lo…
View article: IODP Expedition 392 Salinity
IODP Expedition 392 Salinity Open
Salinity was measured on interstitial water (IW) samples using an optical refractometer.
View article: IODP Expedition 392 RGB channels (calculated from core photos)
IODP Expedition 392 RGB channels (calculated from core photos) Open
Red, green, and blue pixel data were extracted from Section Half Imaging Logger (SHIL) linescan images, typically binned at 0.5 cm resolution using the central 2 cm of the image.
View article: IODP Expedition 392 Whole-round core section images
IODP Expedition 392 Whole-round core section images Open
Images of the outside of hard rock whole-round sections were acquired using a linescan imager (Section Half Imaging Logger [SHIL]) and a special holder that allows each 90 degree segment of the outer surface to be positioned properly. The …