Hauke Smidt
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View article: Whole genome sequences of 289 native cattle from Finland, the Netherlands, and Portugal
Whole genome sequences of 289 native cattle from Finland, the Netherlands, and Portugal Open
View article: Inulin-induced improvements on bowel habit and gut microbiota in adults with functional constipation: findings of a randomized, double-blind, placebo-controlled study
Inulin-induced improvements on bowel habit and gut microbiota in adults with functional constipation: findings of a randomized, double-blind, placebo-controlled study Open
View article: In vitro utilization of barley husk by human gut microbiota depends on husk composition and particle size
In vitro utilization of barley husk by human gut microbiota depends on husk composition and particle size Open
View article: Impulsivity among healthy adults is associated with diet and fecal microbiota composition
Impulsivity among healthy adults is associated with diet and fecal microbiota composition Open
View article: The effects of triclosan on microbial communities in different sources of water and sediments
The effects of triclosan on microbial communities in different sources of water and sediments Open
Triclosan is a widely used antimicrobial agent frequently detected in aquatic environments. Although its effects on environmental microorganisms have been extensively studied, findings often remain inconsistent due to variations in experim…
View article: Harnessing agri-food system microbiomes for sustainability and human health
Harnessing agri-food system microbiomes for sustainability and human health Open
Food system microbiomes include complex microbial networks that range from soil and marine environments to primary agriculture, farming, food processing, and distribution, and which influence human and environmental health. Advances in “om…
View article: Composition and immunomodulatory activity of an arabinoxylan polysaccharide-rich extract of Agaricus subrufescens fermented rye
Composition and immunomodulatory activity of an arabinoxylan polysaccharide-rich extract of Agaricus subrufescens fermented rye Open
This study investigated bioactive carbohydrate-related compounds in rye grain overgrown with Agaricus subrufescens mycelia (ROM), using cytokine induction in chicken immune cells. We focused on polysaccharides, as they have been suggested …
View article: Sponges from Lembeh Strait: antimicrobial activity and prokaryotic diversity
Sponges from Lembeh Strait: antimicrobial activity and prokaryotic diversity Open
Aims This study aims to assess the antimicrobial activity of sponges from Lembeh Strait, explore their prokaryotic diversity, and investigate correlations between sponge antimicrobial activities and their associated prokaryotic communities…
View article: Investigating spatial and temporal dynamics in microbial community composition of multiple full-scale slow sand filters in drinking water treatment
Investigating spatial and temporal dynamics in microbial community composition of multiple full-scale slow sand filters in drinking water treatment Open
Slow sand filters (SSFs) are essential for producing high-quality and sustainable drinking water, relying on chemical, physical, and microbial processes to remove nutrients, organic matter, and pathogens. Despite numerous studies on the ph…
View article: Genome-resolved transcriptomics reveals novel PCE-dehalogenating bacteria from Aarhus Bay sediments
Genome-resolved transcriptomics reveals novel PCE-dehalogenating bacteria from Aarhus Bay sediments Open
Organohalide-respiring bacteria (OHRB) are keystone microbes in bioremediation of sites contaminated with organohalides and in natural halogen cycling. Known OHRB belong to distinct genera within the phyla Chloroflexota , Proteobacteria , …
View article: Why do babies cry? Exploring the role of the gut microbiota in infantile colic, constipation, and cramps in the KOALA birth cohort study
Why do babies cry? Exploring the role of the gut microbiota in infantile colic, constipation, and cramps in the KOALA birth cohort study Open
Gastrointestinal symptoms are common during infancy, including infantile colic. Colic can be loosely defined as prolonged and recurrent crying without obvious cause. The cause indeed remains unclear despite much research. Results on infant…
View article: In vitro incubation reveals the human overall gut microbiota composition is resilient to changes in methanogenesis
In vitro incubation reveals the human overall gut microbiota composition is resilient to changes in methanogenesis Open
Hydrogen metabolism plays a central role in microbial fermentation. However, how hydrogenotrophic microbes impact microbiota composition and metabolite production in gut ecosystems remains largely unknown. Hence this study aims to investig…
View article: Assessing the potential for non-digestible carbohydrates toward mitigating adverse effects of antibiotics on microbiota composition and activity in an <i>in vitro</i> colon model of the weaning infant
Assessing the potential for non-digestible carbohydrates toward mitigating adverse effects of antibiotics on microbiota composition and activity in an <i>in vitro</i> colon model of the weaning infant Open
Environmental factors like diet and antibiotics modulate the gut microbiota in early life. During weaning, gut microbiota progressively diversifies through exposure to non-digestible carbohydrates (NDCs) from diet, while antibiotic perturb…
View article: Impact of environmental and process conditions on the microbial ecology and performance of full-scale slow sand filters in drinking water treatment
Impact of environmental and process conditions on the microbial ecology and performance of full-scale slow sand filters in drinking water treatment Open
Slow sand filters (SSFs) are commonly used for treating drinking water, effectively removing contaminants such as particles, organic matter, and microorganisms. However, the ecological dynamics of prokaryotic communities within SSFs remain…
View article: From river to groundwater: Antibiotics pollution, resistance prevalence, and source tracking
From river to groundwater: Antibiotics pollution, resistance prevalence, and source tracking Open
The extensive use of antibiotics has led to their frequent detection as residues in the environment. However, monitoring of their levels in groundwater and the associated ecological and health risks remains limited, and the impact of river…
View article: Fermented foods affect the seasonal stability of gut bacteria in an Indian rural population
Fermented foods affect the seasonal stability of gut bacteria in an Indian rural population Open
The effect of fermented foods on healthy human gut microbiota structure and function, particularly its seasonal preference and frequent long-term consumption, has been largely uncharacterised. Here, we assess the gut microbiota and metabol…
View article: Randomised controlled trial: nutritional supplements to relieve irritable bowel syndrome symptoms by targeting the gut microbiota
Randomised controlled trial: nutritional supplements to relieve irritable bowel syndrome symptoms by targeting the gut microbiota Open
In individuals with irritable bowel syndrome (IBS), eliminating dietary triggers can alleviate symptoms but may lead to nutrient deficiencies and overall health decline. Although various nutritional supplements show promising results in re…
View article: Exploring the Effects of Carbon Sources and Exogenous Electron Donors on Chain Elongation in Anaerobic Mixed Cultures
Exploring the Effects of Carbon Sources and Exogenous Electron Donors on Chain Elongation in Anaerobic Mixed Cultures Open
View article: <i>Pseudosulfitobacter pseudonitzschiae</i> hitchhikes on gliding colonies of <i>Cellulophaga lytica</i>
<i>Pseudosulfitobacter pseudonitzschiae</i> hitchhikes on gliding colonies of <i>Cellulophaga lytica</i> Open
Interspecies interactions shape microbial communities; this is central for microbial ecology. Cellulophaga lytica PlyA2 is a marine flavobacterium, which glides over surfaces and forms ordered, structurally coloured colonies, which display…
View article: Rationally designed microbial communities in agri-food production systems: from research to market
Rationally designed microbial communities in agri-food production systems: from research to market Open
Primary production needs to transition towards more sustainable systems that reduce environmental impact, mitigate climate change, and ensure healthy food production with limited use of chemical plant protection products, fertilizers, or a…
View article: Concepts and criteria defining emerging microbiome applications
Concepts and criteria defining emerging microbiome applications Open
In recent years, microbiomes and their potential applications for human, animal or plant health, food production and environmental management came into the spotlight of major national and international policies and strategies. This has bee…
View article: Metatranscriptomic analysis indicates prebiotic effect of isomalto/malto-polysaccharides on human colonic microbiota in-vitro
Metatranscriptomic analysis indicates prebiotic effect of isomalto/malto-polysaccharides on human colonic microbiota in-vitro Open
View article: Editorial: Pig translational model in immunological research
Editorial: Pig translational model in immunological research Open
Keywords: pig, microbiota, swine leukocyte antigen, milk oligosaccharides, toll-like receptor 4, PRRS virus, germ-free
View article: Spatio-temporal dynamics of the human small intestinal microbiome and its response to a synbiotic
Spatio-temporal dynamics of the human small intestinal microbiome and its response to a synbiotic Open
Although fecal microbiota composition is considered to preserve relevant and representative information for distal colonic content, it is evident that it does not represent microbial communities inhabiting the small intestine. Nevertheless…
View article: Analysis of the fermentation kinetics and gut microbiota modulatory effect of dried chicory root reveals the impact of the plant-cell matrix rationalizing its conversion in the distal colon
Analysis of the fermentation kinetics and gut microbiota modulatory effect of dried chicory root reveals the impact of the plant-cell matrix rationalizing its conversion in the distal colon Open
Aim: The cell matrix of plant foods has received little attention in prebiotic fiber research. We aimed to understand the impact of the plant cell matrix in dried chicory root on its breakdown in the human gut to explain its reported benef…
View article: Erratum for Konstanti et al., “Physiology of <b>γ</b> -aminobutyric acid production by <i>Akkermansia muciniphila</i> ”
Erratum for Konstanti et al., “Physiology of <b>γ</b> -aminobutyric acid production by <i>Akkermansia muciniphila</i> ” Open
View article: Biobased short chain fatty acid production - Exploring microbial community dynamics and metabolic networks through kinetic and microbial modeling approaches
Biobased short chain fatty acid production - Exploring microbial community dynamics and metabolic networks through kinetic and microbial modeling approaches Open
In recent years, there has been growing interest in harnessing anaerobic digestion technology for resource recovery from waste streams. This approach has evolved beyond its traditional role in energy generation to encompass the production …
View article: Effect of prebiotic oligosaccharides on bowel habit and the gut microbiota in children with functional constipation (Inside study): study protocol for a randomised, placebo-controlled, multi-centre trial
Effect of prebiotic oligosaccharides on bowel habit and the gut microbiota in children with functional constipation (Inside study): study protocol for a randomised, placebo-controlled, multi-centre trial Open
View article: Recovery of microbial biomass and purification performance after scraping of full-scale slow sand filters
Recovery of microbial biomass and purification performance after scraping of full-scale slow sand filters Open
View article: A longitudinal study of the gut microbiota during the first three years of life: links with problem behavior and executive functions at preschool age – CORRIGENDUM
A longitudinal study of the gut microbiota during the first three years of life: links with problem behavior and executive functions at preschool age – CORRIGENDUM Open
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