Jared Vicory
YOU?
Author Swipe
View article: Interior Object Geometry via Fitted Frames
Interior Object Geometry via Fitted Frames Open
We propose a means of computing fitted frames on the boundary and in the interior of objects and using them to provide the basis for producing geometric features from them that are not only alignment-free but most importantly can be made t…
View article: Geodesic-based Predictive Shape Modeling of the Right Ventricle in Patients with Hypoplastic Left Heart Syndrome
Geodesic-based Predictive Shape Modeling of the Right Ventricle in Patients with Hypoplastic Left Heart Syndrome Open
Hypoplastic left heart syndrome (HLHS) is characterized by severe underdevelopment of left ventricle requiring staged surgical reconstruction (stages) to allow the right ventricle (RV) alone to support the circulation. In this setting chan…
View article: ORMIR_XCT: A Python package for high resolutionperipheral quantitative computed tomography image processing
ORMIR_XCT: A Python package for high resolutionperipheral quantitative computed tomography image processing Open
Kuczynski et al., (2024). ORMIR_XCT: A Python package for high resolution peripheral quantitative computed tomography image processing. Journal of Open Source Software, 9(97), 6084, https://doi.org/10.21105/joss.06084
View article: Fitting Skeletal Models via Graph-Based Learning
Fitting Skeletal Models via Graph-Based Learning Open
Skeletonization is a popular shape analysis technique that models an object's\ninterior as opposed to just its boundary. Fitting template-based skeletal\nmodels is a time-consuming process requiring much manual parameter tuning.\nRecently,…
View article: ORMIR_XCT: A Python package for high resolution peripheral quantitative computed tomography image processing
ORMIR_XCT: A Python package for high resolution peripheral quantitative computed tomography image processing Open
High resolution peripheral quantitative computed tomography (HR-pQCT) is an imaging technique capable of imaging trabecular bone in-vivo. HR-pQCT has a wide range of applications, primarily focused on bone to improve our understanding of m…
View article: Introducing the Open and Reproducible Musculoskeletal Imaging Research (ORMIR) community
Introducing the Open and Reproducible Musculoskeletal Imaging Research (ORMIR) community Open
Preprint of the manifesto paper of the ORMIR community
View article: PREPRINT: Introducing the Open and Reproducible Musculoskeletal Imaging Research (ORMIR) community
PREPRINT: Introducing the Open and Reproducible Musculoskeletal Imaging Research (ORMIR) community Open
Preprint of the manifesto paper of the ORMIR community
View article: Skeletal Point Representations with Geometric Deep Learning
Skeletal Point Representations with Geometric Deep Learning Open
Skeletonization has been a popular shape analysis technique that models both the interior and exterior of an object. Existing template-based calculations of skeletal models from anatomical structures are a time-consuming manual process. Re…
View article: Skeletal Point Representations with Geometric Deep Learning
Skeletal Point Representations with Geometric Deep Learning Open
Skeletonization has been a popular shape analysis technique that models both the interior and exterior of an object. Existing template-based calculations of skeletal models from anatomical structures are a time-consuming manual process. Re…
View article: Modeling of the Tricuspid Valve and Right Ventricle in Hypoplastic Left Heart Syndrome With a Fontan Circulation
Modeling of the Tricuspid Valve and Right Ventricle in Hypoplastic Left Heart Syndrome With a Fontan Circulation Open
Background: In hypoplastic left heart syndrome, tricuspid regurgitation (TR) is associated with circulatory failure and death. We hypothesized that the tricuspid valve (TV) structure of patients with hypoplastic left heart syndrome with a …
View article: Skeletons, Object Shape, Statistics
Skeletons, Object Shape, Statistics Open
Objects and object complexes in 3D, as well as those in 2D, have many possible representations. Among them skeletal representations have special advantages and some limitations. For the special form of skeletal representation called “s-rep…
View article: Skeletons, Object Shape, Statistics
Skeletons, Object Shape, Statistics Open
Objects and object complexes in 3D, as well as those in 2D, have many possible representations. Among them skeletal representations have special advantages and some limitations. For the special form of skeletal representation called “s-rep…
View article: Automated fractured femur segmentation using CNN
Automated fractured femur segmentation using CNN Open
Fracture fixation surgeries require a careful and well thought out surgical plan, mainly due to the wide range of possibilities in the fracture types and available choices in fixation constructs. There is considerable interest in virtual 3…
View article: Dental microfracture detection using wavelet features and machine learning
Dental microfracture detection using wavelet features and machine learning Open
Microfractures (cracks) are the third most common cause of tooth loss in industrialized countries. If they are not detected early, they continue to progress until the tooth is lost. Cone beam computed tomography (CBCT) has been used to det…
View article: An open-source solution for shape modeling of objects of challenging topologies
An open-source solution for shape modeling of objects of challenging topologies Open
Shape analysis is an important and powerful tool in a wide variety of medical applications. Many shape analysis techniques require shape representations which are in correspondence. Unfortunately, popular techniques for generating shape re…
View article: Appearance normalization of histology slides
Appearance normalization of histology slides Open
This paper presents a method for automatic color and intensity normalization of digitized histology slides stained with two different agents. In comparison to previous approaches, prior information on the stain vectors is used in the plane…
View article: Non-Euclidean classification of medically imaged objects via s-reps
Non-Euclidean classification of medically imaged objects via s-reps Open
Classifying medically imaged objects, e.g., into diseased and normal classes, has been one of the important goals in medical imaging. We propose a novel classification scheme that uses a skeletal representation to provide rich non-Euclidea…
View article: Shape Deformation Statistics and Regional Texture-Based Appearance Models for Segmentation
Shape Deformation Statistics and Regional Texture-Based Appearance Models for Segmentation Open
Transferring identified regions of interest (ROIs) from planning-time MRI images to the trans-rectal ultrasound (TRUS) images used to guide prostate biopsy is difficult because of the large difference in appearance between the two modaliti…
View article: An Interactive, Patient-Specific Virtual Surgical Planning System for Upper Airway Obstruction Treatments
An Interactive, Patient-Specific Virtual Surgical Planning System for Upper Airway Obstruction Treatments Open
Upper airway obstructions leading todifficulty breathing are significant problems that often require surgery to improve patient quality of life. However, these surgeries often have poor outcomes with little symptom improvement. This paper …