Jeong‐Hwan Mun
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View article: Ethylene biosynthesis in legumes: gene identification and expression during early symbiotic stages
Ethylene biosynthesis in legumes: gene identification and expression during early symbiotic stages Open
The final steps of ethylene biosynthesis involve the consecutive activity of two enzymes, 1-aminocyclopropane-1-carboxylate synthase (ACS) and 1-aminocyclopropane-1-carboxylate oxidase (ACO). These enzymes are encoded by small gene familie…
View article: Structure and evolution of the Forsythieae genome elucidated by chromosome-level genome comparison of Abeliophyllum distichum and Forsythia ovata (Oleaceae)
Structure and evolution of the Forsythieae genome elucidated by chromosome-level genome comparison of Abeliophyllum distichum and Forsythia ovata (Oleaceae) Open
Abeliophyllum distichum and Forsythia ovata are two closely related ornamental species of the tribe Forsythieae (Oleaceae) native to Korea. Here we report their genomic characteristics, highlighting genetic differences contributing to vari…
View article: Chromosome-level assemblies of the endemic Korean species Abeliophyllum distichum and Forsythia ovata
Chromosome-level assemblies of the endemic Korean species Abeliophyllum distichum and Forsythia ovata Open
Abeliophyllum distichum and Forsythia ovata are closely related species endemic to Korea and are highly valued as ornamental shrubs in the Oleaceae family. A combination of PacBio and Illumina sequencing with Hi-C scaffolding technologies …
View article: Early peak of tannin content and gene expression related to tannin biosynthesis in table grape skin during berry development
Early peak of tannin content and gene expression related to tannin biosynthesis in table grape skin during berry development Open
Background Low astringency, a consumer-preferred trait of table grapes, is primarily influenced by the type and concentration of condensed tannins in the skins and seeds of grape berries. Tannin biosynthesis in grapevines involves complex …
View article: Effect of structural variation in the promoter region of RsMYB1.1 on the skin color of radish taproot
Effect of structural variation in the promoter region of RsMYB1.1 on the skin color of radish taproot Open
Accumulation of anthocyanins in the taproot of radish is an agronomic trait beneficial for human health. Several genetic loci are related to a red skin or flesh color of radish, however, the functional divergence of candidate genes between…
View article: Characterization of agronomic traits and genomic diversity in a newly assembled radish core collection
Characterization of agronomic traits and genomic diversity in a newly assembled radish core collection Open
Crop breeding programs are reliant on the genetic diversity of varieties and germplasm collections. Raphanus sativus L. is a root crop species of the Brassicaceae family that accounts for ∼2% of global vegetable production. We recently rep…
View article: Hemoglobins in the legume–<i>Rhizobium </i>symbiosis
Hemoglobins in the legume–<i>Rhizobium </i>symbiosis Open
Summary Legume nodules have two types of hemoglobins: symbiotic or leghemoglobins (Lbs) and nonsymbiotic or phytoglobins (Glbs). The latter are categorized into three phylogenetic classes differing in heme coordination and O 2 affinity. Th…
View article: MtGA2ox10 encoding C20-GA2-oxidase regulates rhizobial infection and nodule development in Medicago truncatula
MtGA2ox10 encoding C20-GA2-oxidase regulates rhizobial infection and nodule development in Medicago truncatula Open
Gibberellin (GA) plays a controversial role in the legume-rhizobium symbiosis. Recent studies have shown that the GA level in legumes must be precisely controlled for successful rhizobial infection and nodule organogenesis. However, regula…
View article: The radish genome database (RadishGD): an integrated information resource for radish genomics
The radish genome database (RadishGD): an integrated information resource for radish genomics Open
Radish (Raphanus sativus L.) is an important root vegetable crop in the family Brassicaceae, which provides diverse nutrients for human health and is closely related to the Brassica crop species. Recently, we sequenced and assembled the ra…
View article: The complete chloroplast genome of <i>Artemisia hallaisanensis</i> Nakai (Asteraceae), an endemic medicinal herb in Korea
The complete chloroplast genome of <i>Artemisia hallaisanensis</i> Nakai (Asteraceae), an endemic medicinal herb in Korea Open
We determined the complete chloroplast DNA sequence of Artemisia hallaisanensis Nakai, an endemic herbal species distributed on Jeju Island, Korea. The chloroplast DNA is 151,015 bp in length and encodes 4 rRNA, 30 tRNA, and 80 protein-cod…
View article: Additional file 4: of Draft genome sequence of wild Prunus yedoensis reveals massive inter-specific hybridization between sympatric flowering cherries
Additional file 4: of Draft genome sequence of wild Prunus yedoensis reveals massive inter-specific hybridization between sympatric flowering cherries Open
Table S3. Evaluation of gene space coverage of the wild P. yedoensis genome using transcriptome unigenes. (XLSX 10 kb)
View article: Additional file 10: of Draft genome sequence of wild Prunus yedoensis reveals massive inter-specific hybridization between sympatric flowering cherries
Additional file 10: of Draft genome sequence of wild Prunus yedoensis reveals massive inter-specific hybridization between sympatric flowering cherries Open
Table S9. Over- or under-represented gene families in the wild P. yedoensis genome compared to the P. avium, P. mume, and P. persica genomes. (XLSX 14 kb)
View article: Additional file 12: of Draft genome sequence of wild Prunus yedoensis reveals massive inter-specific hybridization between sympatric flowering cherries
Additional file 12: of Draft genome sequence of wild Prunus yedoensis reveals massive inter-specific hybridization between sympatric flowering cherries Open
Table S11. Comparison of the chloroplast genomes between Prunus accessions. (XLSX 10 kb)
View article: Additional file 2: of Draft genome sequence of wild Prunus yedoensis reveals massive inter-specific hybridization between sympatric flowering cherries
Additional file 2: of Draft genome sequence of wild Prunus yedoensis reveals massive inter-specific hybridization between sympatric flowering cherries Open
Table S1. Statistics of genome sequence data of wild P. yedoensis (Pyn-Jeju2) used in this study. (XLSX 11 kb)
View article: Additional file 11: of Draft genome sequence of wild Prunus yedoensis reveals massive inter-specific hybridization between sympatric flowering cherries
Additional file 11: of Draft genome sequence of wild Prunus yedoensis reveals massive inter-specific hybridization between sympatric flowering cherries Open
Table S10. Summary of accessions and Illumina short-read data used in whole-genome resequencing analysis. (XLSX 11 kb)
View article: Additional file 7: of Draft genome sequence of wild Prunus yedoensis reveals massive inter-specific hybridization between sympatric flowering cherries
Additional file 7: of Draft genome sequence of wild Prunus yedoensis reveals massive inter-specific hybridization between sympatric flowering cherries Open
Table S6. Annotation statistics of the wild P. yedoensis gene set. (XLSX 10 kb)
View article: Additional file 5: of Draft genome sequence of wild Prunus yedoensis reveals massive inter-specific hybridization between sympatric flowering cherries
Additional file 5: of Draft genome sequence of wild Prunus yedoensis reveals massive inter-specific hybridization between sympatric flowering cherries Open
Table S4. Summary of repetitive sequences identified in the draft genome of wild P. yedoensis. (XLSX 12 kb)
View article: Additional file 9: of Draft genome sequence of wild Prunus yedoensis reveals massive inter-specific hybridization between sympatric flowering cherries
Additional file 9: of Draft genome sequence of wild Prunus yedoensis reveals massive inter-specific hybridization between sympatric flowering cherries Open
Table S8. Coverage of individual chromosomes of peach (Pp), sweet cherry (Pa), and Chinese plum (Pm) showing synteny with the counterpart of wild P. yedoensis (Pyn) genome. (XLSX 11 kb)
View article: Additional file 3: of Draft genome sequence of wild Prunus yedoensis reveals massive inter-specific hybridization between sympatric flowering cherries
Additional file 3: of Draft genome sequence of wild Prunus yedoensis reveals massive inter-specific hybridization between sympatric flowering cherries Open
Table S2. Statistics of transcriptome sequence data of wild P. yedoensis (Pyn-Jeju2) used in this study. (XLSX 11 kb)
View article: Additional file 8: of Draft genome sequence of wild Prunus yedoensis reveals massive inter-specific hybridization between sympatric flowering cherries
Additional file 8: of Draft genome sequence of wild Prunus yedoensis reveals massive inter-specific hybridization between sympatric flowering cherries Open
Table S7. Summary of alternative splicing events identified in protein-coding genes. (XLSX 10 kb)
View article: Additional file 6: of Draft genome sequence of wild Prunus yedoensis reveals massive inter-specific hybridization between sympatric flowering cherries
Additional file 6: of Draft genome sequence of wild Prunus yedoensis reveals massive inter-specific hybridization between sympatric flowering cherries Open
Table S5. Statistics of gene models predicted from the draft genome of wild P. yedoensis. (XLSX 10 kb)
View article: The complete chloroplast genome of <i>Aconitum austrokoreense</i> Koidz. (Ranunculaceae), an endangered endemic species in Korea
The complete chloroplast genome of <i>Aconitum austrokoreense</i> Koidz. (Ranunculaceae), an endangered endemic species in Korea Open
We determined the complete chloroplast genome sequences of Aconitum austrokoreense Koidz., an endangered endemic species in Korea. The chloroplast DNA is 155,682 bp in length and encodes 37 tRNAs, 8 rRNAs, and 86 protein-coding genes. Phyl…