Jiaming Zhang
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View article: Breaking hypoxic barrier: Oxygen-supplied nanomaterials for enhanced T cell-mediated tumor immunotherapy
Breaking hypoxic barrier: Oxygen-supplied nanomaterials for enhanced T cell-mediated tumor immunotherapy Open
Hypoxia in the tumor microenvironment (TME) is a critical barrier to effective cancer immunotherapy, as it suppresses T cell infiltration and response while fostering immune evasion. Oxygen-supplied nanomaterials (OSNs) have recently emerg…
View article: Forest fire risk assessment model optimized by stochastic average gradient descent
Forest fire risk assessment model optimized by stochastic average gradient descent Open
Forest fire is a serious global natural disaster that occurs frequently and is characterized by its suddenness, destructiveness, and difficulty in emergency response. Therefore, it’s of great importance to research forest fire risk assessm…
View article: Screening method and metabolic analysis of plant anti-aging microorganisms via ammonia-induced senescence in the duckweed Wolffia microscopica
Screening method and metabolic analysis of plant anti-aging microorganisms via ammonia-induced senescence in the duckweed Wolffia microscopica Open
Ammonium is the preferred N nutrition over nitrate for some plant species, but it is toxic to many other plant species and induces senescence at high concentrations. The duckweed Wolffia microscopica (Griff.) Kurz is the smallest and fast-…
View article: Classification of a Massive Number of Viral Genomes and Estimation of Time of Most Recent Common Ancestor (tMRCA) of SARS-CoV-2 Using Phylodynamic Analsysis
Classification of a Massive Number of Viral Genomes and Estimation of Time of Most Recent Common Ancestor (tMRCA) of SARS-CoV-2 Using Phylodynamic Analsysis Open
Estimating the time of most recent common ancestor (tMRCA) is important to trace the origin of pathogenic viruses. This analysis is based on the genetic diversity accumulated in a certain time period. There have been thousands of mutant si…
View article: Extensive post-transcriptional regulation revealed by integrative transcriptome and proteome analyses in salicylic acid-induced flowering in duckweed (Lemna gibba)
Extensive post-transcriptional regulation revealed by integrative transcriptome and proteome analyses in salicylic acid-induced flowering in duckweed (Lemna gibba) Open
Duckweed is an aquatic model plant with tremendous potential in industrial and agricultural applications. Duckweed rarely flowers which significantly hinders the resource collection and heterosis utilization. Salicylic acid (SA) can signif…
View article: Metabolic GWAS-based dissection of genetic basis underlying nutrient quality variation and domestication of cassava storage root
Metabolic GWAS-based dissection of genetic basis underlying nutrient quality variation and domestication of cassava storage root Open
Background Metabolites play critical roles in regulating nutritional qualities of plants, thereby influencing their consumption and human health. However, the genetic basis underlying the metabolite-based nutrient quality and domestication…
View article: Full-Length Transcriptome and the Identification of lncRNAs Involved in Salicylic Acid-Induced Flowering in Duckweed (Lemna gibba)
Full-Length Transcriptome and the Identification of lncRNAs Involved in Salicylic Acid-Induced Flowering in Duckweed (Lemna gibba) Open
Long noncoding RNAs (lncRNAs) are crucial components in regulating the flowering of plants. However, the regulatory mechanism of lncRNAs underlying salicylic acid (SA)-induced flowering remains unknown in duckweed (e.g., Lemna gibba L.), a…
View article: Rhizosphere interface microbiome reassembly by arbuscular mycorrhizal fungi weakens cadmium migration dynamics
Rhizosphere interface microbiome reassembly by arbuscular mycorrhizal fungi weakens cadmium migration dynamics Open
The prevalence of cadmium (Cd)‐polluted agricultural soils is increasing globally, and arbuscular mycorrhizal fungi (AMF) can reduce the absorption of heavy metals by plants and improve mineral nutrition. However, the immobilization of the…
View article: Characterization of the mitochondrial genome of <i>Chlorolobion braunii</i> ITBB-AG6, an azolla-associated green alga isolated from sanitary sewage
Characterization of the mitochondrial genome of <i>Chlorolobion braunii</i> ITBB-AG6, an azolla-associated green alga isolated from sanitary sewage Open
Sphaeropleales have the characteristics of rapid growth, high oil content, and efficient removal rates of nitrogen and phosphorus in sewage waters, and is potentially valuable in biodiesel production and environmental remediation. In this …
View article: Characterization of the chloroplast genome of <i>Chlorolobion braunii</i> ITBB-AG6 isolated from a treatment pond of sanitary sewage
Characterization of the chloroplast genome of <i>Chlorolobion braunii</i> ITBB-AG6 isolated from a treatment pond of sanitary sewage Open
Sphaeropleales is an order of fast-growing microalgae with high oil content and high efficiency in sewage treatment, in which photosynthesis plays a critical role. We isolated a strain of Sphaeropleales, Chlorolobion braunii ITBB-AG6 from …
View article: Genome characterization based on the Spike-614 and NS8-84 loci of SARS-CoV-2 reveals two major possible onsets of the COVID-19 pandemic
Genome characterization based on the Spike-614 and NS8-84 loci of SARS-CoV-2 reveals two major possible onsets of the COVID-19 pandemic Open
The global COVID-19 pandemic has lasted for 3 years since its outbreak, however its origin is still unknown. Here, we analyzed the genotypes of 3.14 million SARS-CoV-2 genomes based on the amino acid 614 of the Spike (S) and the amino acid…
View article: Genome analysis of SARS-CoV-2 haplotypes: separation and parallel evolution of the major haplotypes occurred considerably earlier than their emergence in China
Genome analysis of SARS-CoV-2 haplotypes: separation and parallel evolution of the major haplotypes occurred considerably earlier than their emergence in China Open
More than 3 years have passed since the outbreak of COVID-19 and yet, the origin of the causal virus SARS-CoV-2 remains unknown. We examined the evolutionary trajectory of SARS-CoV-2 by analyzing non-redundant genome sets classified based …
View article: Genome charaterization based on the Spike-614 and NS8-84 loci of SARS-CoV-2 reveals two major onsets of the COVID-19 pandemic
Genome charaterization based on the Spike-614 and NS8-84 loci of SARS-CoV-2 reveals two major onsets of the COVID-19 pandemic Open
The global COVID-19 pandemic has lasted for three years since its outbreak, however its origin is still unknown. Here, we analyzed the genotypes of 3.14 million SARS-CoV-2 genomes based on the amino acid 614 of the Spke (S) and the amino a…
View article: The mitochondrial genome of the endophyte <i>Edenia gomezpompae</i> CRI Eg3 isolated from sweet potato
The mitochondrial genome of the endophyte <i>Edenia gomezpompae</i> CRI Eg3 isolated from sweet potato Open
Edenia gomezpompae CRI Eg3 was isolated from the leaves of sweet potato. Its complete mitogenome contains 37,226 bp, with a G + C content of 26.1%. A total of 51 genes were annotated, including 16 protein-coding genes, 33 tRNA genes, and 2…
View article: The chloroplast genome of a unicellular green alga strain isolated from the rubber processing wastewater
The chloroplast genome of a unicellular green alga strain isolated from the rubber processing wastewater Open
Chlorella vulgaris ITBBA3-12 has a role in the purification of the rubber processing wastewater. Its complete chloroplast genome contains 168369 bp, with a G + C content of 33.0%. A total of 147 genes were annotated, including 113 protein-…
View article: Study on fungal life activities of decomposing wood fibers
Study on fungal life activities of decomposing wood fibers Open
The decomposition of plant material and woody fibers is a key component in the carbon cycle. In the whole process, fungi are the key factor to decompose wood fiber. A recent research indicates that there is a certain relationship between f…
View article: Dispersal and germination of winged seeds of Brandisia hancei, a shrub in karst regions of China
Dispersal and germination of winged seeds of Brandisia hancei, a shrub in karst regions of China Open
Brandisia hancei (Paulowniaceae) is a widely distributed shrub in karst regions in southwestern China. Its seeds have a membranous wing, and they mature just before the rainy season begins. To assess the effect of the wing on seed dispersa…
View article: Highly dynamic, coordinated, and stage-specific profiles are revealed by a multi-omics integrative analysis during tuberous root development in cassava
Highly dynamic, coordinated, and stage-specific profiles are revealed by a multi-omics integrative analysis during tuberous root development in cassava Open
Cassava (Manihot esculenta) is an important starchy root crop that provides food for millions of people worldwide, but little is known about the regulation of the development of its tuberous root at the multi-omics level. In this study, th…
View article: Characterization of the mitochondrion genome of a <i>Chlorella vulgaris</i> strain isolated from rubber processing wastewater
Characterization of the mitochondrion genome of a <i>Chlorella vulgaris</i> strain isolated from rubber processing wastewater Open
Chlorella vulgaris ITBBA3-12 was isolated from the rubber processing wastewater and has a role in wastewater purification. Its complete mitogenome contains 88754 bp, with a G + C content of 29.7%. A total of 64 genes were annotated, includ…
View article: The mitochondrion genome of <i>Heveochlorella roystonensis</i> (Trebouxiophyceae) contains large direct repeats
The mitochondrion genome of <i>Heveochlorella roystonensis</i> (Trebouxiophyceae) contains large direct repeats Open
The mitochondrial genome of the epiphytic green alga, Heveochlorella roystonensis was sequenced and characterized. The complete mitogenome contains 130,507 bp, including a single-copy region of 54,865 bp and two direct repeat regions of 37…
View article: The complete mitochondrial genome of the rubber tree endophytic alga <i>Heveochlorella hainangensis</i>
The complete mitochondrial genome of the rubber tree endophytic alga <i>Heveochlorella hainangensis</i> Open
Heveochlorella hainangensis is an endophytic green alga in the rubber tree. Its mitocondrion genome was sequenced and characterized. The complete mitogenome contains 54,084 bp with a G + C content of 30.94%. It contains 56 genes, including…
View article: Physiological and Transcriptomic Analysis Reveals Distorted Ion Homeostasis and Responses in the Freshwater Plant Spirodela polyrhiza L. under Salt Stress
Physiological and Transcriptomic Analysis Reveals Distorted Ion Homeostasis and Responses in the Freshwater Plant Spirodela polyrhiza L. under Salt Stress Open
Duckweeds are a family of freshwater angiosperms with morphology reduced to fronds and propagation by vegetative budding. Unlike other angiosperm plants such as Arabidopsis and rice that have physical barriers between their photosynthetic …
View article: Asymmetric birth and death of type I and type II MADS-box gene subfamilies in the rubber tree facilitating laticifer development
Asymmetric birth and death of type I and type II MADS-box gene subfamilies in the rubber tree facilitating laticifer development Open
The rubber tree (Hevea brasiliensis Muell. Arg.) is a rubber producing crop and contains specialized laticifers. MADS-box genes are a family of transcription factor genes that regulate plant development, especially floral organ and gametop…
View article: Additional file 2: of Strand-specific RNA-seq based identification and functional prediction of drought-responsive lncRNAs in cassava
Additional file 2: of Strand-specific RNA-seq based identification and functional prediction of drought-responsive lncRNAs in cassava Open
Table S1. Summary of 27 lncRNA-mRNA pairs in cis-acting regulatory relationship. (XLSX 23 kb)