Jochen Bathke
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View article: GWAS reveals genomic associations with swine inflammation and necrosis syndrome
GWAS reveals genomic associations with swine inflammation and necrosis syndrome Open
The recently identified swine inflammation and necrosis syndrome (SINS) occurs in high prevalence from newborn piglets to fattening pigs and resembles an important concern for animal welfare. The primary endogenous syndrome affects the tai…
View article: OVarFlow: a resource optimized GATK 4 based Open source Variant calling workFlow
OVarFlow: a resource optimized GATK 4 based Open source Variant calling workFlow Open
Background The advent of next generation sequencing has opened new avenues for basic and applied research. One application is the discovery of sequence variants causative of a phenotypic trait or a disease pathology. The computational task…
View article: OVarFlow: a resource optimized GATK 4 based Open source Variant calling workFlow
OVarFlow: a resource optimized GATK 4 based Open source Variant calling workFlow Open
Background Next generation sequencing technologies are opening new doors to researchers. One application is the direct discovery of sequence variants that are causative for a phenotypic trait or a disease. The detection of an organisms alt…
View article: OVarFlow - an Open source Variant calling workFlow
OVarFlow - an Open source Variant calling workFlow Open
OVarFlow is an Open source Variant calling workflow for the discovery of SNVs (single nucleotide variants) and indels (insertions and deletions) utilizing short read next generation sequencing data. It is based upon the Genome Analysis Too…
View article: Additional file 7 of iCLIP analysis of RNA substrates of the archaeal exosome
Additional file 7 of iCLIP analysis of RNA substrates of the archaeal exosome Open
Additional file 7: List of gene products, A-content, AG-content and the length of the longest poly(A) stretch for each coding sequence.
View article: Additional file 2 of iCLIP analysis of RNA substrates of the archaeal exosome
Additional file 2 of iCLIP analysis of RNA substrates of the archaeal exosome Open
Additional file 2:. iCLIP and RNA-Seq statistics.
View article: Additional file 3 of iCLIP analysis of RNA substrates of the archaeal exosome
Additional file 3 of iCLIP analysis of RNA substrates of the archaeal exosome Open
Additional file 3:. Mapped crosslink sites.
View article: Additional file 5 of iCLIP analysis of RNA substrates of the archaeal exosome
Additional file 5 of iCLIP analysis of RNA substrates of the archaeal exosome Open
Additional file 5: RNA-tails with mapped 5′-sequence, detected by iCLIP of the archaeal exosome.
View article: Additional file 8 of iCLIP analysis of RNA substrates of the archaeal exosome
Additional file 8 of iCLIP analysis of RNA substrates of the archaeal exosome Open
Additional file 8: Poly(A) stretches in CDS and in intergenic regions (IGRs), and binding of the archaeal exosome detected by iCLIP.
View article: Additional file 4 of iCLIP analysis of RNA substrates of the archaeal exosome
Additional file 4 of iCLIP analysis of RNA substrates of the archaeal exosome Open
Additional file 4: CircRNAs identified in the iCLIP analysis of the S. solfataricus exosome.
View article: Additional file 9 of iCLIP analysis of RNA substrates of the archaeal exosome
Additional file 9 of iCLIP analysis of RNA substrates of the archaeal exosome Open
Additional file 9: iCLIP and RNA-Seq counts of annotated genes included in Fig. S5.
View article: Cellular Gene Expression during Hepatitis C Virus Replication as Revealed by Ribosome Profiling
Cellular Gene Expression during Hepatitis C Virus Replication as Revealed by Ribosome Profiling Open
Background: Hepatitis C virus (HCV) infects human liver hepatocytes, often leading to liver cirrhosis and hepatocellular carcinoma (HCC). It is believed that chronic infection alters host gene expression and favors HCC development. In part…
View article: Additional file 1: of Comparative analyses of the variation of the transcriptome and proteome of Rhodobacter sphaeroides throughout growth
Additional file 1: of Comparative analyses of the variation of the transcriptome and proteome of Rhodobacter sphaeroides throughout growth Open
Summary of all changes in transcriptome and proteome. (XLSX 981 kb)
View article: Additional file 3: of Comparative analyses of the variation of the transcriptome and proteome of Rhodobacter sphaeroides throughout growth
Additional file 3: of Comparative analyses of the variation of the transcriptome and proteome of Rhodobacter sphaeroides throughout growth Open
RNAs showing changes in accumulation at various growth phases. (XLSX 21 kb)
View article: Additional file 4: of Comparative analyses of the variation of the transcriptome and proteome of Rhodobacter sphaeroides throughout growth
Additional file 4: of Comparative analyses of the variation of the transcriptome and proteome of Rhodobacter sphaeroides throughout growth Open
Proteins showing changed levels at various growth phases and their COG associations. (XLSX 595 kb)