Explanipedia

The Swedish Reference Genome Portal: A Hub for Non-Human Eukaryotic Genomic Data Visualisation, Discovery, and Reuse Open

Henrik Lantz, Johan Rung · 2025

Non-human eukaryotic genome assemblies and annotations are frequently dispersed across repositories, supplementary materials, or remain unpublished. Their access often requires technical expertise and large downloads, hindering usability. …

The Network of National COVID-19 Data Portals: public health equity through collaboration Open

Marianna Ventouratou, Liane Hobson, Katarina Öjefors Stark, Johan Rung, Natalia Koralewska , et al. · 2025

The network of the national COVID-19 Data Portals was developed and linked to the COVID-19 Data Portal (https://www.covid19dataportal.org/) in response to the need for rapid data sharing and analysis during the 2020-2022 SARS-CoV-2 pandemi…

Building and running an infectious disease portal in the midst of a pandemic: lessons learnt for future pandemics Open

L Hughes, Katarina Öjefors Stark, Arnold Kochari, Philip Ewels, Parul Tewatia , et al. · 2024

Community-driven portals are websites that can act to facilitate the coordination of community efforts, enable bidirectional data flow, facilitate access to resources (e.g. data services and guidelines), and promote best practice. As a res…

Den nationella Covid-19 dataportalen. Snabbare forskning genom datadelning under Covid-19 pandemin- Poster Open

Katarina Öjefors Stark, Arnold Kochari, Parul Tewatia, P. Kraulis, Linus J. Östberg , et al. · 2021

Poster presented at State of the Art Covid conference https://www.sls.se/state-of-the-art-covid-19/ arranged by the Swedish Medical Society Dec 15-16 2020. The poster is describing the national Covid-19 Data Portal found at https://www.cov…

Ten simple rules for annotating sequencing experiments Open

Irene Stevens, Abdul Kadir Mukarram, Matthias Hörtenhuber, Terrence F. Meehan, Johan Rung , et al. · 2020

Publisher Correction: Building an international consortium for tracking coronavirus health status Open

Eran Segal, Feng Zhang, Xihong Lin, Gary King, Ophir Shalem , et al. · 2020

Building an international consortium for tracking coronavirus health status Open

Eran Segal, Feng Zhang, Xihong Lin, Gary King, Ophir Shalem , et al. · 2020

We call upon the research community to standardize efforts to use daily self-reported data about COVID-19 symptoms in the response to the pandemic and to form a collaborative consortium to maximize global gain while protecting participant …

Building an International Consortium for Tracking Coronavirus Health Status Open

Eran Segal, Feng Zhang, Xihong Lin, Gary King, Ophir Shalem , et al. · 2020

Information is the most potent protective weapon we have to combat a pandemic, at both the individual and global level. For individuals, information can help us make personal decisions and provide a sense of security. For the global commun…

MuscleAtlasExplorer: a web service for studying gene expression in human skeletal muscle Open

Olof Asplund, Johan Rung, Leif Groop, Rashmi B. Prasad, Ola Hansson · 2020

MuscleAtlasExplorer is a freely available web application that allows for the exploration of gene expression data from human skeletal muscle. It draws from an extensive publicly available dataset of 1654 skeletal muscle expression microarr…

Blood transcriptome profile induced by an efficacious vaccine formulated with salivary antigens from cattle ticks Open

Sandra Regina Maruyama, Benilton S. Carvalho, Mar Gonzàlez-Porta, Johan Rung, Alvis Brāzma , et al. · 2019

Aberration hubs in protein interaction networks highlight actionable targets in cancer Open

Mehran Karimzadeh, Pouria Jandaghi, Andreas I. Papadakis, Sebastian Trainor, Johan Rung , et al. · 2018

Despite efforts for extensive molecular characterization of cancer patients, such as the international cancer genome consortium (ICGC) and the cancer genome atlas (TCGA), the heterogeneous nature of cancer and our limited knowledge of the …

Adaptive Mistranslation Accelerates the Evolution of Fluconazole Resistance and Induces Major Genomic and Gene Expression Alterations in Candida albicans Open

Tobias Weil, Rodrigo Santamaría, Wanseon Lee, Johan Rung, Noemi Tocci , et al. · 2017

Infectious diseases caused by drug-resistant fungi are an increasing threat to public health because of the high mortality rates and high costs associated with treatment. Thus, understanding of the molecular mechanisms of drug resistance i…

Identification of Cancer Related Genes Using a Comprehensive Map of Human Gene Expression Open

Aurora Torrente, Margus Lukk, Vincent Xue, Helen Parkinson, Johan Rung , et al. · 2016

Rapid accumulation and availability of gene expression datasets in public repositories have enabled large-scale meta-analyses of combined data. The richness of cross-experiment data has provided new biological insights, including identific…

A novel atlas of gene expression in human skeletal muscle reveals molecular changes associated with aging Open

Jing Su, Carl Johan Ekman, Nikolay Oskolkov, Leo Lahti, Kristoffer Ström , et al. · 2015

Harmonising and linking biomedical and clinical data across disparate data archives to enable integrative cross-biobank research Open

Ola Spjuth, Maria Krestyaninova, Janna Hastings, Huei-Yi Shen, Jani Heikkinen , et al. · 2015

Discovery and Fine-Mapping of Glycaemic and Obesity-Related Trait Loci Using High-Density Imputation Open

Momoko Horikoshi, Reedik Mägi, Martijn van de Bunt, Ida Surakka, Antti‐Pekka Sarin , et al. · 2015

Reference panels from the 1000 Genomes (1000G) Project Consortium provide near complete coverage of common and low-frequency genetic variation with minor allele frequency ≥0.5% across European ancestry populations. Within the European Netw…

Functional loss of IκBε leads to NF-κB deregulation in aggressive chronic lymphocytic leukemia Open

Larry Mansouri, Lesley‐Ann Sutton, Viktor Ljungström, Sina Bondza, Linda Arngården , et al. · 2015

NF-κB is constitutively activated in chronic lymphocytic leukemia (CLL); however, the implicated molecular mechanisms remain largely unknown. Thus, we performed targeted deep sequencing of 18 core complex genes within the NF-κB pathway in …

The impact of low-frequency and rare variants on lipid levels Open

Ida Surakka, Momoko Horikoshi, Reedik Mägi, Antti‐Pekka Sarin, Anubha Mahajan , et al. · 2015

Additional file 2: Table S2 of A novel atlas of gene expression in human skeletal muscle reveals molecular changes associated with aging Open

Jing Su, Carl Johan Ekman, Nikolay Oskolkov, Leo Lahti, Kristoffer StrĂśm , et al. · 2015

957 genes significantly associated with age across 340 samples (XLSX 257 kb)

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