Jolanda Lambert
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View article: Pairwise ratio-based differential abundance analysis of infant microbiome 16S sequencing data
Pairwise ratio-based differential abundance analysis of infant microbiome 16S sequencing data Open
Differential abundance analysis of infant 16S microbial sequencing data is complicated by challenging data properties, including high sparsity, extreme dispersion and the relative nature of the information contained within the data. In thi…
View article: Assessment of infant outgrowth of cow’s milk allergy in relation to the faecal microbiome and metaproteome
Assessment of infant outgrowth of cow’s milk allergy in relation to the faecal microbiome and metaproteome Open
Previous studies provide evidence for an association between modifications of the gut microbiota in early life and the development of food allergies. We studied the faecal microbiota composition (16S rRNA gene amplicon sequencing) and faec…
View article: Comparative genome and methylome analysis reveals restriction/modification system diversity in the gut commensal Bifidobacterium breve
Comparative genome and methylome analysis reveals restriction/modification system diversity in the gut commensal Bifidobacterium breve Open
Bifidobacterium breve represents one of the most abundant bifidobacterial species in the gastro-intestinal tract of breast-fed infants, where their presence is believed to exert beneficial effects. In the present study whole genome sequenc…
View article: The Variable Regions of<i>Lactobacillus rhamnosus</i>Genomes Reveal the Dynamic Evolution of Metabolic and Host-Adaptation Repertoires
The Variable Regions of<i>Lactobacillus rhamnosus</i>Genomes Reveal the Dynamic Evolution of Metabolic and Host-Adaptation Repertoires Open
Lactobacillus rhamnosus is a diverse Gram-positive species with strains isolated from different ecological niches. Here, we report the genome sequence analysis of 40 diverse strains of L. rhamnosus and their genomic comparison, with a focu…